GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000339-TA|BGIBMGA000339-PA|IPR000618|Insect cuticle
protein
         (296 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20990.1 68415.m02485 C2 domain-containing protein (sytA) sim...    30   2.1  
At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR...    30   2.1  
At2g01410.1 68415.m00060 hypothetical protein                          29   4.9  
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR...    28   6.5  
At5g27590.1 68418.m03304 hypothetical protein                          28   6.5  
At4g17620.1 68417.m02636 glycine-rich protein                          28   6.5  
At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative sim...    28   6.5  
At1g30500.2 68414.m03729 CCAAT-binding transcription factor (CBF...    28   6.5  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    28   8.6  

>At2g20990.1 68415.m02485 C2 domain-containing protein (sytA)
           similar to Ca2+-dependent lipid-binding protein (CLB1)
           GI:2789434 from [Lycopersicon esculentum]
          Length = 541

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 128 EGQPLDGAHGN---DIIYNEFVNENIDKGEYSYRFKTIDETEKDETAYFNEDGDLVVVGY 184
           +GQP D   G    +++Y  F  E + KG     F+     +K         G LVV+  
Sbjct: 373 DGQPPDKYRGKLEVELLYKPFTEEEMPKG-----FEETQAVQKAPEGTPAAGGMLVVI-V 426

Query: 185 YSYVDPEGKIHYVPY 199
           +S  D EGK H  PY
Sbjct: 427 HSAEDVEGKHHTNPY 441


>At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 992

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 30  EIIENNYTIDVKGNYVFSFKTTNDLIRYEE-GIVVNSGEPNEHIEVYGYY 78
           E +E +  ++     +F F T+++ +   E GI + +GE N +I  YG Y
Sbjct: 897 EFLEEDGWLEQDNEVLFKFTTSSEELDIIECGIQILTGETNRNISTYGSY 946


>At2g01410.1 68415.m00060 hypothetical protein
          Length = 387

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 13  IFIAVVNSAPIKDESLAEIIENNYTIDVKGN 43
           +F++ + S P  DE +A  + N+  +D KGN
Sbjct: 137 VFLSPLPSLPGDDEDIARDVANDVAVDFKGN 167


>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
           class), putative (RPS4) domain signature TIR-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPS4 (GI:11357255). False intron created at
           intron 2 to escape a frameshift in the BAC sequence.
          Length = 1217

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/49 (22%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 51  TNDLIRYEEGIVVNSGEPNEHIEVYGYYSYINDAGEPVRVDYSATEEGY 99
           TN L+  ++  +V +    + ++++ Y+++I+D   P + D+    EG+
Sbjct: 351 TNGLV--DDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGF 397


>At5g27590.1 68418.m03304 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 115 LFVLVVCIVQSLTEGQPLDGAHGNDIIYNEFVNENIDKGEYSYRFKTI--DETEKDETAY 172
           LFV  +  V++L     +   HG+D   +   N + +  E  Y    +  D+T++DE   
Sbjct: 104 LFVSFITTVKTLKNN--VSRTHGDDAESDRVSNVD-ENNEAVYEQDDVEDDKTDEDEKDG 160

Query: 173 FNEDGDLVVVGYYSYVDPEGKI 194
            NEDGD    GY  Y   +G +
Sbjct: 161 DNEDGD----GYDDYQGDDGSM 178


>At4g17620.1 68417.m02636 glycine-rich protein
          Length = 544

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 136 HGNDIIYNEFVNENIDKGEYSYRFKTIDETEKDETAYFNEDGD 178
           HG+D + +   N+N + G Y Y  +  +E E+DE   F  D +
Sbjct: 82  HGDDKVESYRSNDNGESGVYPYEEE--EEEEEDEKDLFGSDNE 122


>At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative
           similar to monovalent cation:proton antiporter family 2
           (CPA2) members (see PMID:11500563 for other members)
          Length = 735

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 18/150 (12%)

Query: 29  AEIIENNYTIDVKGNYVFSFKTTND-LIRYEEGIVVNSGEPNEHI----EVYGYYSYIND 83
           A+  E +  +D +  Y F+FKT ND  + Y E +V N  E    I    +   Y  YI  
Sbjct: 585 ADEYEKDKHVDEESIYEFNFKTMNDPSVTYVEKVVKNGQETITAILELEDNNSYDLYIVG 644

Query: 84  AGEPVR-------VDYSATEEGYKIGDE--QKDMTMNVPFLFVLVVCIVQSLT----EGQ 130
            G  V         D+++T +   IGD     + TM    L V         T      +
Sbjct: 645 RGYQVETPVTSGLTDWNSTPDLGIIGDTLISSNFTMQASVLVVQQYSSANRQTAENNNQE 704

Query: 131 PLDGAHGNDIIYNEFVNENIDKGEYSYRFK 160
           P+ G    D     F+ +  D+ E+ Y  +
Sbjct: 705 PVQGKAKTDHEATPFMEDEDDEVEHQYSMR 734


>At1g30500.2 68414.m03729 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
          Length = 190

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 183 GYYSYVDPEGKIHYVPYRADKTGFHIEKISSGSFNLP---NAIVASLLGGYETSEGSFRK 239
           G Y Y DP  +  + P     TG H++ +      +P   +A+   +    +   G  R+
Sbjct: 56  GQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRR 115

Query: 240 EEXXXXXXXXXXXVVRGEYGYIDPSGHRHAIK 271
            +           V++    Y+  S H HAI+
Sbjct: 116 RQ-SRARLESQNKVIKSRKPYLHESRHLHAIR 146


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 3   GTVLKIVILHIFIAVVNSAPIKDESLAEIIENNYTID-VKGNYVFSFKTTNDLIRYE 58
           G+ L + I + +IA++ S  + D S   I+  NY    ++ +Y   F+  N  + +E
Sbjct: 835 GSALILPISYTYIAMMGSGGLTDASKIAILNANYMAKRLESHYPVLFRGVNGTVAHE 891


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.139    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,293,646
Number of Sequences: 28952
Number of extensions: 326027
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 9
length of query: 296
length of database: 12,070,560
effective HSP length: 81
effective length of query: 215
effective length of database: 9,725,448
effective search space: 2090971320
effective search space used: 2090971320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)