Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000338-TA|BGIBMGA000338-PA|IPR000618|Insect cuticle
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (154 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               30   0.74 
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                27   5.2  
SB_24925| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)              27   6.9  
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             27   6.9  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               27   9.1  

>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 81  SFTYTSPEGIPISVSYVADENGFRPEGAHL-----PTPPPIPEAILRALQ 125
           S++ TSP   P S SY      + P          PTPPP+P +I   LQ
Sbjct: 567 SYSPTSPSYSPTSPSYSPSSPSYSPSSPSFHHNLRPTPPPLPLSIPLLLQ 616


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 52  ETGNGIAAQEQGYLKNAGAKDAEAQVAQGSFTYTSPEGIPISVSYVADENGFRPEGAHLP 111
           E G   A +  G +++AG +   A  A G    +  +  PI +   A E G  P+G   P
Sbjct: 357 EGGVNQANESSGIVRHAGQEGEGAHGAGGLENRSREQKSPIGIEGRAGEQGSCPQGVQPP 416

Query: 112 T 112
           +
Sbjct: 417 S 417


>SB_24925| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
          Length = 555

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 34  ILSQSQDVN---FDGSYQFSYETGNGIAAQEQGYLKNAGAKDAEAQVAQ-GSFTYTSPEG 89
           IL+ +  VN   F+G   F Y  G    A+   Y     + D +A +++ G  T      
Sbjct: 261 ILAMNASVNLYMFEGGTSFGYMNGANCGAKSSQYQPQPTSYDYDAPLSEAGDITLKYRLL 320

Query: 90  IPISVSYVADENGFRPE 106
           + +   YV   +G  P+
Sbjct: 321 LEVIAGYVGPPSGLPPK 337


>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 63  GYLKNAGAKDAEAQVAQGSFTYTSPEGIPISVSYVADENGFRPEGAHLPTPPPI 116
           G  +  G  DA     + ++T   PEG+      +    G+ P GA +P+P P+
Sbjct: 705 GATEPTGPCDAGFYCRERAYTSAPPEGL---TGGLCPAGGYCPMGAKVPSPCPV 755


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 91  PISVSYVADENGFRPE--GAHLPTPPPIP 117
           P+  S V     F+P   GA +PT PP+P
Sbjct: 149 PVEPSSVVASISFKPSAAGASVPTAPPVP 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,021,245
Number of Sequences: 59808
Number of extensions: 159815
Number of successful extensions: 384
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 6
length of query: 154
length of database: 16,821,457
effective HSP length: 76
effective length of query: 78
effective length of database: 12,276,049
effective search space: 957531822
effective search space used: 957531822
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)