GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000338-TA|BGIBMGA000338-PA|IPR000618|Insect cuticle
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (154 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily a...    30   0.83 
U88314-14|AAF99890.1|  794|Caenorhabditis elegans Hypothetical p...    27   4.4  
U88314-13|AAL16322.1| 1062|Caenorhabditis elegans Hypothetical p...    27   4.4  
U80441-8|AAB37656.1|  284|Caenorhabditis elegans Dumpy : shorter...    27   4.4  
AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical ...    27   4.4  
AB259784-1|BAF48662.1|  323|Caenorhabditis elegans ROG-1 protein.      27   4.4  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    27   4.4  

>AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 262 protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 68  AGAKDAEAQVAQGSFTYTSPEGIPISVSYVADENGFRPEGAHLPTPPPIPEAI 120
           + A  + AQV Q S    +P  IPI+ + +A      P    LPT PP+P +I
Sbjct: 51  SSAATSSAQVIQPSLL-AAPPFIPIAAT-IAVSPFINPALGRLPTMPPVPPSI 101


>U88314-14|AAF99890.1|  794|Caenorhabditis elegans Hypothetical
           protein C46H11.11a protein.
          Length = 794

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 100 ENGFR--PEGAHLPTPPPIPEAI 120
           ENG R  P G  +P PPP P AI
Sbjct: 222 ENGMRGGPVGVGVPPPPPPPSAI 244


>U88314-13|AAL16322.1| 1062|Caenorhabditis elegans Hypothetical
           protein C46H11.11b protein.
          Length = 1062

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 100 ENGFR--PEGAHLPTPPPIPEAI 120
           ENG R  P G  +P PPP P AI
Sbjct: 490 ENGMRGGPVGVGVPPPPPPPSAI 512


>U80441-8|AAB37656.1|  284|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 5 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 7   ISALVAMACAAPQLTXXXXXXXXXVIPILSQSQDVNFDGSYQFSYETGNGIAAQEQGYLK 66
           ISA+VA   AA  +T         V+  L   +D++ D ++    +  +G     + Y++
Sbjct: 14  ISAIVACLWAALVITNDINDMYDDVMGELGGFRDIS-DDTWGTLLDVRHGAGESAEQYVR 72

Query: 67  NAGA--KDAEAQVAQGSFTYTSPEGIPISVSYVADENGFRPEGAHLPTPPP 115
                 K + +Q + G  +   P G P +     +  G  P+G + PT  P
Sbjct: 73  GIFGRHKRSNSQCSCGLPSQGCPAGAPGNPGAPGEPGGTGPDGKNGPTGLP 123


>AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical
           protein Y48G10A.3 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 64  YLKNAGAKDAEAQVAQGSFTYTSPEGIPISVSYVAD 99
           Y  NA  ++ +AQ    +FTY + +GI  ++  VAD
Sbjct: 85  YNVNAPGQEMDAQPLPENFTYPTMDGIAKTIESVAD 120


>AB259784-1|BAF48662.1|  323|Caenorhabditis elegans ROG-1 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 44  DGSYQFSYETGNGIAAQEQGYLKNAGAKDAEAQVAQGSFTYTSPEGIPISVSYVAD-ENG 102
           +G + F  +  + I    Q  ++       E Q  + SF Y   + +PIS   +++  N 
Sbjct: 102 EGMFTFQSKKADEIFQLIQSLIEEFANTSMEKQNMENSFRYQRQQSVPISSRRMSNTSNT 161

Query: 103 FRPEGAHLPTPP--PIPEA 119
               G    +PP  PIP A
Sbjct: 162 SSVFGLKYSSPPLMPIPSA 180


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 100 ENGFR--PEGAHLPTPPPIPEAI 120
           ENG R  P G  +P PPP P AI
Sbjct: 757 ENGMRGGPVGVGVPPPPPPPSAI 779


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,055
Number of Sequences: 27539
Number of extensions: 127923
Number of successful extensions: 362
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 7
length of query: 154
length of database: 12,573,161
effective HSP length: 76
effective length of query: 78
effective length of database: 10,480,197
effective search space: 817455366
effective search space used: 817455366
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)