GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000338-TA|BGIBMGA000338-PA|IPR000618|Insect cuticle
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (154 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    99   1e-23
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        28   0.049
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        28   0.049
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        28   0.049
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.46 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   3.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   5.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   9.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score =   99 bits (238), Expect = 1e-23
 Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 2/93 (2%)

Query: 34  ILSQSQDVNFDGSYQFSYETGNGIAAQEQGYLKNAGAKDAEAQVAQGSFTYTSPEGIPIS 93
           I SQ  +VNFDG+Y  ++ET NGI+ QE G  K     +    V+QGS +YT+P+G  +S
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVD--NETPVVSQGSDSYTAPDGQQVS 86

Query: 94  VSYVADENGFRPEGAHLPTPPPIPEAILRALQY 126
           ++YVADENGF+ +G+H+PT PPIP  I RAL++
Sbjct: 87  ITYVADENGFQVQGSHIPTAPPIPPEIQRALEW 119


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 0.049
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 62  QGYLKNAGAKDAEAQVAQGSFTYTSPEGIPISVSYVADENGFRPEGAHLPTPPPIPEAIL 121
           QGY+ N G  + EA   Q   T     G      +  D      +   +P PP +PE  L
Sbjct: 309 QGYMTNNGVNNVEA--VQKELTDLGKLGEEEKADWWKDIMLLNEKTLAVPAPPVLPENHL 366

Query: 122 RALQYIE 128
           +  +Y++
Sbjct: 367 KNAKYLD 373


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 0.049
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 62  QGYLKNAGAKDAEAQVAQGSFTYTSPEGIPISVSYVADENGFRPEGAHLPTPPPIPEAIL 121
           QGY+ N G  + EA   Q   T     G      +  D      +   +P PP +PE  L
Sbjct: 309 QGYMTNNGVNNVEA--VQKELTDLGKLGEEEKADWWKDIMLLNEKTLAVPAPPVLPENHL 366

Query: 122 RALQYIE 128
           +  +Y++
Sbjct: 367 KNAKYLD 373


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 0.049
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 62  QGYLKNAGAKDAEAQVAQGSFTYTSPEGIPISVSYVADENGFRPEGAHLPTPPPIPEAIL 121
           QGY+ N G  + EA   Q   T     G      +  D      +   +P PP +PE  L
Sbjct: 309 QGYMTNNGVNNVEA--VQKELTDLGKLGEEEKADWWKDIMLLNEKTLAVPAPPVLPENHL 366

Query: 122 RALQYIE 128
           +  +Y++
Sbjct: 367 KNAKYLD 373


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.46
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 87   PEGIP-ISVSYVADENGFRPEGAHLPTPPPIPEAILRA 123
            PE +P + +S    + G   +G+   T PP P +I RA
Sbjct: 1369 PERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRA 1406


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 75  AQVAQGSFTYTSPE 88
           AQ+  GS+ Y SPE
Sbjct: 122 AQIKTGSYDYPSPE 135


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 34 ILSQSQDVNFDGSYQFS-YETGNG 56
          ++  S D  FDG+YQ S   T NG
Sbjct: 74 LMYNSADEGFDGTYQTSVVVTHNG 97


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 34 ILSQSQDVNFDGSYQFS 50
          ++  S D  FDG+YQ S
Sbjct: 74 LMYNSADEGFDGTYQTS 90


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 34 ILSQSQDVNFDGSYQFS 50
          ++  S D  FDG+YQ S
Sbjct: 74 LMYNSADEGFDGTYQTS 90


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 34 ILSQSQDVNFDGSYQFS 50
          ++  S D  FDG+YQ S
Sbjct: 74 LMYNSADEGFDGTYQTS 90


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 34 ILSQSQDVNFDGSYQFS 50
          ++  S D  FDG+YQ S
Sbjct: 74 LMYNSADEGFDGTYQTS 90


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 34 ILSQSQDVNFDGSYQFS 50
          ++  S D  FDG+YQ S
Sbjct: 74 LMYNSADEGFDGTYQTS 90


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 49  FSYETGNGIAAQEQGYLKNAGAKDAEAQVAQGSFTY 84
           F     NG++ Q     KN   K  + ++    FTY
Sbjct: 465 FESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTY 500


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 49  FSYETGNGIAAQEQGYLKNAGAKDAEAQVAQGSFTY 84
           F     NG++ Q     KN   K  + ++    FTY
Sbjct: 91  FESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTY 126


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 34  ILSQSQDVNFDGSYQ 48
           ++  S D  FDG+YQ
Sbjct: 142 LMYNSADEGFDGTYQ 156


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 34  ILSQSQDVNFDGSYQ 48
           ++  S D  FDG+YQ
Sbjct: 142 LMYNSADEGFDGTYQ 156


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 106 EGAHLPTPPPIPEAILRAL 124
           +G  LP P   PEAI + +
Sbjct: 853 KGYRLPAPMDCPEAIYQLM 871


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,275
Number of Sequences: 429
Number of extensions: 1668
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 154
length of database: 140,377
effective HSP length: 53
effective length of query: 101
effective length of database: 117,640
effective search space: 11881640
effective search space used: 11881640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)