GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000338-TA|BGIBMGA000338-PA|IPR000618|Insect cuticle
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (154 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14805.1 68417.m02276 protease inhibitor/seed storage/lipid t...    29   1.1  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    27   4.3  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    27   4.3  
At4g26920.1 68417.m03874 hypothetical protein                          27   5.6  
At3g47730.1 68416.m05200 ABC transporter family protein AbcA, Di...    27   7.4  

>At4g14805.1 68417.m02276 protease inhibitor/seed storage/lipid
           transfer protein (LTP)-related weak hit to Pfam PF00234:
           Protease inhibitor/seed storage/LTP family
          Length = 219

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 80  GSFTYTSPEGIPISVSYVADENGFRPEGAHLPTPPPIPEAILRALQYIES 129
           G+    SP+ + ++       + F PE A L  PPP P   L  LQY  S
Sbjct: 146 GNNVSASPQSVDLAPEVSPSSDLFSPETATLAPPPPPPP--LPVLQYFSS 193


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 84  YTSPEGIPISVSYVADENG---FRPEGAHLPTPPPIPEA 119
           Y+SP   P    + A  NG   F P     P PPP P+A
Sbjct: 82  YSSPAYPPHQPPFNAGANGNSQFPPPSTGAPIPPPYPQA 120


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 84  YTSPEGIPISVSYVADENG---FRPEGAHLPTPPPIPEA 119
           Y+SP   P    + A  NG   F P     P PPP P+A
Sbjct: 82  YSSPAYPPHQPPFNAGANGNSQFPPPSTGAPIPPPYPQA 120


>At4g26920.1 68417.m03874 hypothetical protein
          Length = 461

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 31  VIPILSQSQDVNFDGSYQFSYETGNGIAAQEQGYLKNAGAKDAEAQVAQGSFTYTSPE 88
           ++ + S ++ +N D SY F+Y  G  I   +     N+G +DA   V+ G  T  + E
Sbjct: 384 ILDVSSLAKIINGDRSYSFTYPCGFTIMPGQ-----NSGDEDAGCVVSVGFLTIATEE 436


>At3g47730.1 68416.m05200 ABC transporter family protein AbcA,
           Dictyostelium discoideum, DDU66526
          Length = 983

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 80  GSFTYTSPEGIPISVSYVADENGFRPEGAHLPTPPPIPEAI 120
           G+ T  +P G+ + V +  DE+G      H  T  PIPE I
Sbjct: 886 GTETAENPRGVMVEVYWQQDESGSLCISGH-STEMPIPENI 925


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,996
Number of Sequences: 28952
Number of extensions: 119571
Number of successful extensions: 305
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 5
length of query: 154
length of database: 12,070,560
effective HSP length: 75
effective length of query: 79
effective length of database: 9,899,160
effective search space: 782033640
effective search space used: 782033640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)