GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000337-TA|BGIBMGA000337-PA|IPR000618|Insect cuticle
protein
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce...    28   0.57 
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   1.7  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    25   7.0  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    24   9.3  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    24   9.3  

>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 37  ESDGPNPDGSYKWLYETGNEINAEETGYVKNFGK 70
           E +  NPD  ++W Y     I  +   Y KN  K
Sbjct: 80  EEEEENPDAEFRWGYSARRRIRKQREEYFKNQDK 113


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 121 IQKALDYLKTLPPSAQDSSNSQGQYQQPAPFKPR 154
           I + LD L T  P A D    QG+Y      +P+
Sbjct: 297 IDELLDTLSTTSPDAADDDALQGKYHAMIALRPK 330


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
          S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 56 EINAEETGYVKNFGKGEGEEVQVAE 80
          E++ +ETG++K F K   E V+V +
Sbjct: 9  EVSLDETGHIKLFNKFPFEGVEVKD 33


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 49  WLYETGNEINAEETGYVKNFGKGEGE-EVQVAEGKFSY 85
           WLY+   + N  E+  VK F K   E E Q  E + SY
Sbjct: 293 WLYDRSKKGNLYESCKVKEFEKDALELEEQTMEDEKSY 330


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 31/132 (23%), Positives = 44/132 (33%), Gaps = 11/132 (8%)

Query: 26  SINDPIPIIRYESDGPNPDGSYKWLYETGNEINAEETGYVKNFGKGEGEEVQVAEGKFSY 85
           S N P P    + D P  D     LYE  N+    E    +N     G       G    
Sbjct: 263 SENVPKPNAETQEDLPTIDAHESSLYENVNDSRLYEVPACRNMALNTGYS-DADPGYLRT 321

Query: 86  KAPDGSLIALSYIADENGFQPQGDHLXXXXXXXXAIQKALDYLKTLPPSAQDSSNSQGQY 145
                S  +L Y A+E     Q D L        +      Y+     S++D  +     
Sbjct: 322 SFRSNSHNSLPYSANEEEDVLQADFLVSQQSSMVS-----SYV-----SSRDPHSMPYYR 371

Query: 146 QQPAPFKPRGRF 157
           ++P P +P  RF
Sbjct: 372 REPIPLRPSSRF 383


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,287
Number of Sequences: 5004
Number of extensions: 32180
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 5
length of query: 157
length of database: 2,362,478
effective HSP length: 67
effective length of query: 90
effective length of database: 2,027,210
effective search space: 182448900
effective search space used: 182448900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)