GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000337-TA|BGIBMGA000337-PA|IPR000618|Insect cuticle
protein
         (157 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41544-3|AAA83185.3|  439|Caenorhabditis elegans Gex interacting...    29   2.0  
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    27   6.1  
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    27   6.1  

>U41544-3|AAA83185.3|  439|Caenorhabditis elegans Gex interacting
           protein protein 15 protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 51  YETGNEINAEETGYVKNFGKGEGEEVQVAEGKFS 84
           + TG  + A E G+   +G G G   +   G FS
Sbjct: 152 WSTGGSVPASEAGFGSEYGPGSGRNSRAGGGAFS 185


>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 65  VKNFGKGEGEEVQVAEGKF-SYKAPDGSLIALSYIADENGFQPQGDHLXXXXXXXXAIQK 123
           +KNF       +Q A  +F ++ A  G + A  +++DE GF    D L         +QK
Sbjct: 598 LKNFPNEIQHTIQWAREQFETFFAQPGEM-ANKFLSDERGFNEHVDKL-ISGQQIDILQK 655

Query: 124 ALDYL-KTLPPSAQDSSN-SQGQYQQ 147
             D L    P SA+D    ++ Q+Q+
Sbjct: 656 VKDALIDARPSSAEDCIRWARNQFQE 681


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 65  VKNFGKGEGEEVQVAEGKF-SYKAPDGSLIALSYIADENGFQPQGDHLXXXXXXXXAIQK 123
           +KNF       +Q A  +F ++ A  G + A  +++DE GF    D L         +QK
Sbjct: 683 LKNFPNEIQHTIQWAREQFETFFAQPGEM-ANKFLSDERGFNEHVDKL-ISGQQIDILQK 740

Query: 124 ALDYL-KTLPPSAQDSSN-SQGQYQQ 147
             D L    P SA+D    ++ Q+Q+
Sbjct: 741 VKDALIDARPSSAEDCIRWARNQFQE 766


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,218,315
Number of Sequences: 27539
Number of extensions: 183605
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 3
length of query: 157
length of database: 12,573,161
effective HSP length: 76
effective length of query: 81
effective length of database: 10,480,197
effective search space: 848895957
effective search space used: 848895957
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)