GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000337-TA|BGIBMGA000337-PA|IPR000618|Insect cuticle
protein
         (157 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    73   1e-15
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 73.3 bits (172), Expect = 1e-15
 Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 7   ISILLCTLAVFYAVHAQQHSINDPIPIIRYESDGPNPDGSYKWLYETGNEINAEETGYVK 66
           ++++LCT A   A         D   +I  +    N DG+Y   +ET N I+ +E+G  K
Sbjct: 3   VAVVLCTTATLAAPQRPSGGA-DKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPK 61

Query: 67  NFGKGEGEEVQVAEGKFSYKAPDGSLIALSYIADENGFQPQGDHLXXXXXXXXAIQKALD 126
                + E   V++G  SY APDG  ++++Y+ADENGFQ QG H+         IQ+AL+
Sbjct: 62  QV---DNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALE 118

Query: 127 Y 127
           +
Sbjct: 119 W 119


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 67 NFGKGEGEEVQVAEGKFSYK 86
          NFG  E  +  +  G+++YK
Sbjct: 44 NFGSDEKRQAAIQSGEYNYK 63


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 13/54 (24%), Positives = 22/54 (40%)

Query: 20   VHAQQHSINDPIPIIRYESDGPNPDGSYKWLYETGNEINAEETGYVKNFGKGEG 73
            V +QQ  + DP P  R     P P  + +   +   +  ++E    K    G+G
Sbjct: 979  VQSQQPIMTDPSPFKRGRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATGGKG 1032


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,375
Number of Sequences: 429
Number of extensions: 2307
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 157
length of database: 140,377
effective HSP length: 53
effective length of query: 104
effective length of database: 117,640
effective search space: 12234560
effective search space used: 12234560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)