Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000336-TA|BGIBMGA000336-PA|IPR000618|Insect cuticle
protein
         (207 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   4.0  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   5.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.3  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 111 QDNTALVQQGSYTYTAPDGQVITVEY 136
           QD+T +V++ + T      QV+ +EY
Sbjct: 177 QDDTPMVRRAAATKLGELAQVVELEY 202


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 37  EQNFNNYQPQQQE 49
           ++NF NY+P+  E
Sbjct: 226 QENFENYEPKSPE 238


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 67  TSTYIPIIRFDKEQGTDGSYKTSYETGNN 95
           +S  I I+ + KE GTD      +  G+N
Sbjct: 213 SSHVITILDWTKEDGTDKFMSHIHNDGDN 241


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,176
Number of Sequences: 317
Number of extensions: 2042
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 207
length of database: 114,650
effective HSP length: 54
effective length of query: 153
effective length of database: 97,532
effective search space: 14922396
effective search space used: 14922396
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.2 bits)
S2: 41 (20.6 bits)