GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000336-TA|BGIBMGA000336-PA|IPR000618|Insect cuticle
protein
         (207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.16 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    28   1.1  
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa...    27   2.0  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    26   3.5  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   3.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   4.6  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   8.0  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 21/85 (24%), Positives = 30/85 (35%)

Query: 34  LPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETG 93
           +P+ Q   NYQ Q   Y+Q    D +     L      P  +F+   G       S    
Sbjct: 29  MPINQGGMNYQQQTYPYQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVADY 88

Query: 94  NNIQAQEQGYLKTVGDNQDNTALVQ 118
              Q Q  GY   +    +NT  +Q
Sbjct: 89  GQQQQQMYGYNGMMPQTMNNTGFMQ 113


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 37  EQNFNNYQPQQQEYRQAKPVDDFRPK-VQLETSTYIPIIRFDKEQGTDGSYKTSYETGNN 95
           +  F + + Q+++Y    P++  RP+ + +    YI I     + GTD ++    E   +
Sbjct: 178 QDEFEDEERQEEKYETGPPIESVRPEALGISDDDYIQIYEVFGD-GTDYAFALEDEDAED 236

Query: 96  IQAQEQGYLKTV 107
            + +E   LKT+
Sbjct: 237 -ELEESVSLKTI 247


>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 129

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 23 SLKPEQQVEDQLPLEQNFNNYQPQQQEYR 51
          S+    +VE++ PLE    N++ QQQ+ R
Sbjct: 25 SIPAVHRVENKHPLESRLKNWEAQQQQIR 53


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 54  KPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETGNNIQAQEQGYLKT 106
           KP+ D +PK + +T T + I R+   Q  +   K   +     + QE+ +  T
Sbjct: 106 KPMQDEKPKTEADTRT-LKIARYRMRQNLEKELKALSKDSETNEEQERKFWLT 157


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 19  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQ 64
           Q++   + +QQ + Q   +Q     Q QQQ+ ++  P + F P  Q
Sbjct: 257 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQNAFFPNPQ 302


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 20  RKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDD 58
           +K+  K + Q+E++   E+  N+ +P   E  + KP  D
Sbjct: 244 QKIGFKNDNQLENKAISEEEANSTEPPNVEKEEPKPSVD 282


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 44  QPQQQEYRQAKPVDDFRPKVQLETSTY 70
           +P + E+RQ +P+  F P+ Q  +  Y
Sbjct: 432 KPLRVEFRQLRPMQQFSPQYQYPSYPY 458


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 933,841
Number of Sequences: 5004
Number of extensions: 40112
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 9
length of query: 207
length of database: 2,362,478
effective HSP length: 70
effective length of query: 137
effective length of database: 2,012,198
effective search space: 275671126
effective search space used: 275671126
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)