GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000336-TA|BGIBMGA000336-PA|IPR000618|Insect cuticle
protein
         (207 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53918| Best HMM Match : Flavin_Reduct (HMM E-Value=1.1)             31   0.52 
SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_31639| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)                  28   6.4  
SB_51172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   8.4  
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)               27   8.4  

>SB_53918| Best HMM Match : Flavin_Reduct (HMM E-Value=1.1)
          Length = 139

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 14/67 (20%), Positives = 30/67 (44%)

Query: 84  GSYKTSYETGNNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPDGQVITVEYTADEFGF 143
           G   + Y++G+ +   + G + +V  + D  ++ Q G        G +++V  + D    
Sbjct: 17  GDMVSVYQSGDVVSVNQSGDMVSVNQSGDMVSVYQSGDMVSVYQSGDMVSVYQSGDMVSV 76

Query: 144 RVSGDHI 150
             SGD +
Sbjct: 77  NQSGDMV 83



 Score = 30.7 bits (66), Expect = 0.90
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 84  GSYKTSYETGNNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPDGQVITVEYTADEFGF 143
           G   + Y++G+ +   + G + +V  + D  ++ Q G        G V++V  + D    
Sbjct: 53  GDMVSVYQSGDMVSVYQSGDMVSVNQSGDMVSVNQSGDVVSVYQSGDVVSVYQSGDVVSV 112

Query: 144 RVSGD 148
             SGD
Sbjct: 113 YKSGD 117



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 84  GSYKTSYETGNNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPDGQVITVEYTADEFGF 143
           G   + Y++G+ +   + G + +V  + D  ++ Q G        G V++V  + D    
Sbjct: 44  GDMVSVYQSGDMVSVYQSGDMVSVYQSGDMVSVNQSGDMVSVNQSGDVVSVYQSGDVVSV 103

Query: 144 RVSGD 148
             SGD
Sbjct: 104 YQSGD 108



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 90  YETGNNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPDGQVITVEYTADEFGFRVSGDH 149
           Y++G+ +   + G + +V  + D  ++ Q G        G +++V  + D      SGD 
Sbjct: 14  YQSGDMVSVYQSGDVVSVNQSGDMVSVNQSGDMVSVYQSGDMVSVYQSGDMVSVYQSGDM 73

Query: 150 I 150
           +
Sbjct: 74  V 74



 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 96  IQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPDGQVITVEYTADEFGFRVSGDHI 150
           +   + GY+ +V  + D  ++ Q G        G +++V  + D      SGD +
Sbjct: 2   VSVNQSGYVVSVYQSGDMVSVYQSGDVVSVNQSGDMVSVNQSGDMVSVYQSGDMV 56



 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 91  ETGNNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPDGQVITVEYTADEFGFRVSGD 148
           ++G+ +   + G + +V  + D  ++ Q G        G +++V  + D      SGD
Sbjct: 33  QSGDMVSVNQSGDMVSVYQSGDMVSVYQSGDMVSVYQSGDMVSVNQSGDMVSVNQSGD 90


>SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 27  EQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLE 66
           +QQ++ Q   +Q     QPQQQ+ +Q +P      + QL+
Sbjct: 103 QQQLQQQQQQQQQLQQQQPQQQQQQQQQPQQQQPQQQQLQ 142


>SB_28850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 22  VSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPII 74
           +SL+P + ++    L  NF +YQ   Q  R + P++      QL TST I ++
Sbjct: 158 ISLQPLKGIKSDKDLVSNFKSYQ---QSARSSSPINVATNSKQLTTSTPIKVM 207


>SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 27  EQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLE 66
           +QQ++ Q   +Q     QPQQQ+ +Q +P      + QL+
Sbjct: 102 QQQLQQQQQQQQQLQQQQPQQQQQQQQQPQQQQPQQQQLQ 141


>SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 82  TDGSYK--TSYETGNNIQAQEQGYLKTVGDNQDNTALVQ 118
           TDGS +  TSYE+ + I  Q+        +NQD +AL+Q
Sbjct: 282 TDGSMRENTSYESCHTISGQDAARSAPPNNNQDYSALMQ 320


>SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 18  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFD 77
           P+ K S KP+ Q  D+        + +PQ Q+ + A+P        +L+           
Sbjct: 25  PKTKTS-KPQDQ--DKQAARPRQASRKPQDQDKQAARPRQASLKTSKLQDQNNQAARPRQ 81

Query: 78  KEQGTDGSYKTSYETGNNIQAQEQGYLKTVGDNQDNTALVQQ 119
             Q    S KTS     N Q       +T   +QDNT  V+Q
Sbjct: 82  ARQARQASLKTSKLQDQNKQDARPASRRTKPQDQDNTRQVRQ 123


>SB_31639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 18 PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETST 69
          PQ  +S + + Q + Q   +Q     Q QQQ+ +Q +     +P+ Q  T+T
Sbjct: 10 PQACLSTEKKHQQQQQKKQQQQPQQQQQQQQQQQQPQQQQQQQPQQQATTTT 61



 Score = 27.5 bits (58), Expect = 8.4
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 18  PQRKVSLKPEQQVEDQLPL----EQNFNNYQPQQ-QEYRQAKPVDDFRPKVQLETSTYIP 72
           PQ++   +P+QQ             N NN Q QQ Q+ +Q +P           T+T   
Sbjct: 45  PQQQQQQQPQQQATTTTTTTTSNNSNHNNKQQQQPQQQQQQQPQQQQATTTTATTTTATT 104

Query: 73  IIRFDKEQGTDGSYKTSYETGNNIQAQEQ 101
                     + ++  S    N  Q Q+Q
Sbjct: 105 TTTTTTSNNNNSNHNNSNHNNNKQQQQQQ 133


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 19  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQ 64
           QR  S  P      Q P +  +   QPQQQ+ +Q+   D FRP+ Q
Sbjct: 673 QRGASYPPRMPGMQQTPSQYGYQ--QPQQQQQQQS--FDQFRPQFQ 714


>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
          Length = 603

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 19  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 68
           Q++V    +Q+++ Q  L+Q+    Q QQ+ ++Q +       + +LE S
Sbjct: 282 QQQVQHMQQQRLQQQQLLQQHLQRQQQQQRRHQQQQQQQQLHQQQRLEQS 331


>SB_51172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 19  QRKVSLKPEQQVEDQLPLEQNFNNYQP--------QQQEYRQAKPVDDFRPKVQLETSTY 70
           QR+   +P+ Q  +Q P +Q    YQP        QQQ+Y+   P   ++ +  L+   Y
Sbjct: 148 QRQPQYQPQGQASNQQPPQQGQRPYQPSYQGQPSQQQQQYQGQTP---YQQQPPLQRGPY 204

Query: 71  IP 72
           +P
Sbjct: 205 LP 206


>SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 27  EQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRP-KVQ 64
           EQQ +  +P  Q  + YQ QQQ+  Q  PV  F P KVQ
Sbjct: 310 EQQQQQHIPRPQ-LHEYQQQQQQ--QRDPVRHFEPLKVQ 345


>SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 852

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 54  KPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYK-TSYETGNNIQAQEQGYLKTVGDNQD 112
           K + DF   V    ++Y   +RF+K Q  DG+Y   +++  N     E     + GD  D
Sbjct: 406 KTLIDFLRNVTFPDASYGWPVRFNKNQEMDGNYSIMNFQYQNGKWVYENVGSWSWGDESD 465

Query: 113 NTAL 116
           N  +
Sbjct: 466 NVRM 469


>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
          Length = 905

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 170 GIKANQERAAIEAKS--NPEAARQQEEKAALD 199
           G+K   E AAI  KS  +P+ ARQ  +KA LD
Sbjct: 653 GLKQEVEIAAITVKSKESPQQARQIAQKAILD 684


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,833,487
Number of Sequences: 59808
Number of extensions: 306107
Number of successful extensions: 978
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 47
length of query: 207
length of database: 16,821,457
effective HSP length: 79
effective length of query: 128
effective length of database: 12,096,625
effective search space: 1548368000
effective search space used: 1548368000
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 58 (27.5 bits)