GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000336-TA|BGIBMGA000336-PA|IPR000618|Insect cuticle
protein
         (207 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50469-1|AAA93473.1|  160|Anopheles gambiae protein ( Anopheles ...    31   0.019
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    29   0.076
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            27   0.31 
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    25   1.2  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          25   2.2  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    24   2.9  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   2.9  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    24   3.8  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              23   5.0  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   6.6  
U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          23   8.7  
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          23   8.7  
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          23   8.7  
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           23   8.7  
AY825690-1|AAV70253.1|  159|Anopheles gambiae subtilase serine p...    23   8.7  
AY825689-1|AAV70252.1|  159|Anopheles gambiae subtilase serine p...    23   8.7  
AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       23   8.7  
AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.      23   8.7  
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    23   8.7  

>U50469-1|AAA93473.1|  160|Anopheles gambiae protein ( Anopheles
           gambiae putativecuticle protein mRNA, partial cds. ).
          Length = 160

 Score = 31.5 bits (68), Expect = 0.019
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 117 VQQGSYTYTAPDGQVITVEYTAD 139
           V QGSY+   PDG   TV+YTAD
Sbjct: 48  VVQGSYSVVDPDGTKRTVDYTAD 70


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 0.076
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 19  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKP 55
           Q++   +P+QQ + Q P +Q     +PQQQ  +Q KP
Sbjct: 458 QQRQQQQPQQQ-QQQRPQQQRPQQQRPQQQRSQQRKP 493



 Score = 27.1 bits (57), Expect = 0.41
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 19  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 68
           Q++   + +QQ + Q   +Q    +Q QQQ+ +Q +     R + QL+ S
Sbjct: 345 QQRQQQQRQQQQQQQQQHQQQQQQWQQQQQQQQQPRQSLPHRKQTQLQLS 394



 Score = 23.8 bits (49), Expect = 3.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 19  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 68
           Q++   + +QQ + Q   +Q     Q QQQ  +Q +     +P+ QL T+
Sbjct: 188 QQQQQQQQQQQQQQQQQQQQRQQQQQCQQQRQQQPQQQQLQQPQQQLWTT 237



 Score = 23.4 bits (48), Expect = 5.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 19  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 52
           QR+   + +QQ + Q   +Q     Q QQQ+  Q
Sbjct: 330 QRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQQHQ 363


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 27.5 bits (58), Expect = 0.31
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 23   SLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETS 68
            S + +QQ + Q   +Q     Q QQQ+++        RP   L TS
Sbjct: 1299 SQQQQQQQQQQQQQQQQQQQQQQQQQQHQPPSTQAQLRPSAPLNTS 1344


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 19  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIR 75
           Q++ SL+ +QQ + Q   +Q     Q QQQ+ +  +P  D    V  E  T+  + R
Sbjct: 187 QQQRSLQQQQQQQQQQQQQQQ-EQQQQQQQQRKIRRPKADLIEVVPQEGLTWDSVYR 242



 Score = 22.6 bits (46), Expect = 8.7
 Identities = 10/48 (20%), Positives = 24/48 (50%)

Query: 27  EQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPII 74
           +Q+ + Q  L+Q     Q QQQ+ ++ +     + K++   +  I ++
Sbjct: 183 QQREQQQRSLQQQQQQQQQQQQQQQEQQQQQQQQRKIRRPKADLIEVV 230


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 27  EQQVEDQLPLEQNFNNYQPQQQEYRQAKP--VDDFRPKVQLETSTYI 71
           +QQ + Q   +Q+  + Q QQQ++    P  ++  + ++Q +T TY+
Sbjct: 125 QQQQQQQQQQQQHHQHQQLQQQQHHYYTPQLLNLDQEQLQTQTFTYV 171


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 76  FDKEQGTDGSYKTSYETGNNIQAQEQGYLKTVGDNQ 111
           +D  Q  +  Y+    TG+ I  + +GYL+   D +
Sbjct: 574 YDYNQNGESCYRLMSRTGDFIYLKTRGYLEVDSDTK 609


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 158 AEIQKGLDLIYAGIKANQERAAIEAKSNPEAARQQEEKAALDYK 201
           A+ QK  + + AG+  N++  A   +    AA+Q+  +A    K
Sbjct: 374 AKAQKRFEAVSAGLSTNEDGEAATLQDQLIAAKQKSAEATTAIK 417


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 23  SLKPEQQVEDQLPLEQNFNNYQPQQQEYRQ 52
           S + +QQ + Q  L+Q   + Q QQQ  RQ
Sbjct: 238 SSQQQQQQQQQQSLQQQQLSQQQQQQRQRQ 267


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 18/104 (17%), Positives = 38/104 (36%)

Query: 19  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPVDDFRPKVQLETSTYIPIIRFDK 78
           Q++   + +QQ + Q         +Q QQQ+ +  +     + +VQ +   +    +  +
Sbjct: 236 QQQQQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQREQQQQQRVQQQNQQHQRQQQQQQ 295

Query: 79  EQGTDGSYKTSYETGNNIQAQEQGYLKTVGDNQDNTALVQQGSY 122
           +Q      +   E    +  + Q   +    NQ      Q G Y
Sbjct: 296 QQRQQQQQQEQQELWTTVVRRRQNTQQQQQSNQPQQQQQQTGRY 339


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 139 DEFGFRVSGDHIPTP-PPVSAEIQKGLDLI 167
           +E G R+ G +IP P PP  +   KG  LI
Sbjct: 42  EEGGTRIGGIYIPPPVPPYCSTECKGPRLI 71


>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 123 TYTAPDGQVITV 134
           +Y  PDGQVIT+
Sbjct: 240 SYELPDGQVITI 251


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 123 TYTAPDGQVITV 134
           +Y  PDGQVIT+
Sbjct: 240 SYELPDGQVITI 251


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 123 TYTAPDGQVITV 134
           +Y  PDGQVIT+
Sbjct: 240 SYELPDGQVITI 251


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 123 TYTAPDGQVITV 134
           +Y  PDGQVIT+
Sbjct: 240 SYELPDGQVITI 251


>AY825690-1|AAV70253.1|  159|Anopheles gambiae subtilase serine
           protease protein.
          Length = 159

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 107 VGDNQDNTALVQQGSYTYTA 126
           + D+ D+T L Q  SYT+TA
Sbjct: 133 MADHFDSTDLKQNLSYTFTA 152


>AY825689-1|AAV70252.1|  159|Anopheles gambiae subtilase serine
           protease protein.
          Length = 159

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 107 VGDNQDNTALVQQGSYTYTA 126
           + D+ D+T L Q  SYT+TA
Sbjct: 133 MADHFDSTDLKQNLSYTFTA 152


>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 45  PQQQEYRQAKPVDDFRPKVQ 64
           P  +E R+   VD++RP VQ
Sbjct: 382 PSFEEMRKVVCVDNYRPSVQ 401


>AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 141 FGFRVSGDHIPTPPPVSAEIQKG 163
           FGF  S     TPP V AE  +G
Sbjct: 49  FGFSCSSAPTMTPPSVQAEGLRG 71


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 26  PEQQVEDQLPLEQNFNNYQPQQQEYRQAKPV 56
           P  QV   +P + N N  Q  Q + +Q +P+
Sbjct: 86  PSSQVGGVIPPQSNGNPLQQTQVQPQQQQPI 116


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.309    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,286
Number of Sequences: 2123
Number of extensions: 9336
Number of successful extensions: 60
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 38
length of query: 207
length of database: 516,269
effective HSP length: 61
effective length of query: 146
effective length of database: 386,766
effective search space: 56467836
effective search space used: 56467836
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)