GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000336-TA|BGIBMGA000336-PA|IPR000618|Insect cuticle
protein
         (207 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    92   4e-21
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             35   5e-04
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.52 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.7  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   2.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   6.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 91.9 bits (218), Expect = 4e-21
 Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 3/87 (3%)

Query: 79  EQGTDGSYKTSYETGNNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPDGQVITVEYTA 138
           E   DG+Y  ++ET N I  QE G  K V DN+  T +V QGS +YTAPDGQ +++ Y A
Sbjct: 35  EVNFDGNYINNFETSNGISHQESGQPKQV-DNE--TPVVSQGSDSYTAPDGQQVSITYVA 91

Query: 139 DEFGFRVSGDHIPTPPPVSAEIQKGLD 165
           DE GF+V G HIPT PP+  EIQ+ L+
Sbjct: 92  DENGFQVQGSHIPTAPPIPPEIQRALE 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 18  PQRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAKPV--DDFRPKVQLETS 68
           PQ +   +P+QQ + Q    Q     Q QQQ+ +Q  P+  DDF P ++ E S
Sbjct: 822 PQAQAQAQPQQQQQQQQQQPQQ-QQQQQQQQQQQQRGPMTNDDFNPNIEEEAS 873



 Score = 28.7 bits (61), Expect = 0.042
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 19   QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQE---YRQAKPVDDFRPKVQLETSTYIPIIR 75
            Q+    +P+QQ + Q   +    + QPQQQ+    +Q +     +P+ Q +    +  + 
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLV 1557

Query: 76   FDKEQGTDGSYKTSYETGNNIQAQEQ 101
               ++G +     S E  N+ Q Q+Q
Sbjct: 1558 VQLQRGYNSGNNRSGEQANSQQQQQQ 1583



 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 19   QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRQAK 54
            QR  ++  +QQ + Q   +Q     Q QQQ+  QA+
Sbjct: 1202 QRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAR 1237


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 175 QERAAIEAKSNPEAARQQEEKAALDYK 201
           ++RA I AK +  AA Q+ EK  ++YK
Sbjct: 414 KQRAEILAKEHKAAADQKLEKHLIEYK 440


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 19  QRKVSLKPEQQVEDQLPLEQN-FNNYQPQQQEYRQ 52
           +++  ++ +QQ + Q    Q+  N  QPQQQ+ +Q
Sbjct: 413 EQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQ 447



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 25  KPEQQVEDQLPLEQNFNNYQPQQQEY 50
           +P+QQ + Q   +Q     Q QQQ +
Sbjct: 439 QPQQQQQQQQQQQQQQQQQQQQQQHW 464


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 123 TYTAPDGQVITV 134
           +Y  PDGQVIT+
Sbjct: 14  SYELPDGQVITI 25


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 140 EFGFRVSGDHIPTPP 154
           E+G RV  D I TPP
Sbjct: 424 EYGIRVERDPILTPP 438


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 108 GDNQDNTALVQQGSYTYT 125
           G ++   A +Q G Y YT
Sbjct: 43  GSDEKRQAAIQSGDYNYT 60


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 108 GDNQDNTALVQQGSYTYT 125
           G ++   A +Q G Y YT
Sbjct: 49  GSDEKRQAAIQSGEYDYT 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,586
Number of Sequences: 429
Number of extensions: 3116
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 207
length of database: 140,377
effective HSP length: 55
effective length of query: 152
effective length of database: 116,782
effective search space: 17750864
effective search space used: 17750864
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)