GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000335-TA|BGIBMGA000335-PA|IPR000618|Insect cuticle
protein
         (440 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    23   3.2  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    23   3.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   4.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   4.3  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    23   4.3  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   9.9  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   9.9  

>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 30  EYDPSGAYRFSYE 42
           +YDPSG YR  Y+
Sbjct: 102 KYDPSGEYRSKYK 114


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 28  SEEYDPSGAYRFSYE 42
           S++YDP G Y+  YE
Sbjct: 104 SKKYDPQGQYKKRYE 118


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 378 SSETPTAITEALTDLSSTTSEPISTEAVSTTVVQDIPSSTL 418
           S  +P+  T   T  S+  S P+    +ST+     PSST+
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTPLIEFNISTSNYLYTPSSTI 44


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 378 SSETPTAITEALTDLSSTTSEPISTEAVSTTVVQDIPSSTL 418
           S  +P+  T   T  S+  S P+    +ST+     PSST+
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTPLIEFNISTSNYLYTPSSTI 44


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 30  EYDPSGAYRFSYE 42
           +YDP G YR  YE
Sbjct: 117 KYDPDGIYRKQYE 129


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 29  EEYDPSGAYRFSY 41
           E+YDP G Y+  Y
Sbjct: 102 EKYDPKGEYKSRY 114


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 29  EEYDPSGAYRFSYE 42
           E+YD  G YR  YE
Sbjct: 106 EKYDKEGEYRKKYE 119


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.305    0.123    0.328 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,955
Number of Sequences: 317
Number of extensions: 1416
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 440
length of database: 114,650
effective HSP length: 59
effective length of query: 381
effective length of database: 95,947
effective search space: 36555807
effective search space used: 36555807
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 44 (21.8 bits)