GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000335-TA|BGIBMGA000335-PA|IPR000618|Insect cuticle
protein
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0127 - 977667-978719,978875-979051                               30   3.2  

>06_01_0127 - 977667-978719,978875-979051
          Length = 409

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 372 VTTDSGSSETPTAITEALTDLSSTTSEPISTEAVSTTVVQD 412
           V T +G  + P   T  L   ++T S P  T AVS TV+ D
Sbjct: 46  VATGAGIGQKPHLTTTRLGTTATTNSAPDGTSAVSQTVIID 86


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.305    0.123    0.328 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,333,941
Number of Sequences: 37544
Number of extensions: 182641
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 1
length of query: 440
length of database: 14,793,348
effective HSP length: 84
effective length of query: 356
effective length of database: 11,639,652
effective search space: 4143716112
effective search space used: 4143716112
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 61 (28.7 bits)