GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000335-TA|BGIBMGA000335-PA|IPR000618|Insect cuticle
protein
         (440 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    44   3e-06
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   2.2  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   5.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   5.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   6.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 43.6 bits (98), Expect = 3e-06
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 21/90 (23%)

Query: 24  IVSQSEEYDPSGAYRFSYETGNGIKREEAAFDKVLPKSSARVAXXXXXXXXXXXXXXXXX 83
           I SQ  E +  G Y  ++ET NGI  +E+   K +   +  V+                 
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS----------------- 71

Query: 84  IHVQKGSYSYTAPDGTLITVKYIADENGFR 113
               +GS SYTAPDG  +++ Y+ADENGF+
Sbjct: 72  ----QGSDSYTAPDGQQVSITYVADENGFQ 97


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 102 TVKYIADENGFRPTIIQSSKNSGEIQFTSSVSEKTGRVLKPTDNEE 147
           T+ YI D  GF   I  +S NS + + TSS      R    T N E
Sbjct: 199 TLVYIGDNEGFALIIYNNSDNSFQ-RLTSSTFASDPRYTTFTINGE 243


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 30  EYDPSGAYRFSYETGNGIKRE 50
           +YDP+GAY+  Y   N +K E
Sbjct: 107 KYDPTGAYKQHY-LQNRVKEE 126


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 30  EYDPSGAYRFSYETGNGIKRE 50
           +YDP+GAY+  Y   N +K E
Sbjct: 107 KYDPTGAYKQHY-LQNRVKEE 126


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 379 SETPTAITEALTDLSSTTSEPISTEAVSTTVV 410
           S  PT      T+ S+TTS  IS + +   VV
Sbjct: 377 SLVPTTTASPTTEPSTTTSTTISQKHIKVFVV 408


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.305    0.123    0.328 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,372
Number of Sequences: 429
Number of extensions: 2193
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 440
length of database: 140,377
effective HSP length: 60
effective length of query: 380
effective length of database: 114,637
effective search space: 43562060
effective search space used: 43562060
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 45 (22.2 bits)