GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000335-TA|BGIBMGA000335-PA|IPR000618|Insect cuticle
protein
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    30   2.7  

>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 369 NTPVTTDSGSSETPTAITE-ALTDLSSTTSEPISTEAVSTTVVQDIPSSTLA 419
           N+     +GSS  P + T  A+  +++TT+   ST A ++      P+ST+A
Sbjct: 371 NSGFNLSTGSSAAPASSTSGAVFSIATTTTTSSSTPAATSAPASSAPASTMA 422


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.305    0.123    0.328 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,142,989
Number of Sequences: 28952
Number of extensions: 150752
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 1
length of query: 440
length of database: 12,070,560
effective HSP length: 83
effective length of query: 357
effective length of database: 9,667,544
effective search space: 3451313208
effective search space used: 3451313208
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 61 (28.7 bits)