Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000334-TA|BGIBMGA000334-PA|IPR000618|Insect cuticle
protein
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   4.1  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   4.1  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    25   5.5  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   5.5  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    24   7.2  

>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 47  YETDNGIKAEETGSLKKASGPDAS 70
           YE D  +K ++T SLKK  G  A+
Sbjct: 947 YEADRALKNKKTQSLKKPFGNQAT 970


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 22  QKSDQTAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQG 77
           +K+D+T  I ++  D ++    + S ETD+ + A +T + + A   +A +    +G
Sbjct: 323 EKTDKTDAIAEKVSDIRLGDGEKKSSETDSEVAATKTPATEDAPATNAGEAEEEEG 378


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)

Query: 88  VISLNYVADDDGGFKPEGAHL 108
           ++++++VA+D   FKP+  HL
Sbjct: 4   ILAVHHVAEDIEAFKPKALHL 24


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 21   PQKSDQTAEIIKQDFDQQVDGSYQFSYETD 50
            P  ++ T EI++Q+F   VD + +F  E++
Sbjct: 1179 PYSAEVTVEILRQNFQVNVDIACKFPNESN 1208


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 31  IKQDFDQQVDGSYQFSYETDNGIKAEETGSLK 62
           +++DFD+Q     Q  Y   N   A++   +K
Sbjct: 827 VREDFDKQTSSLAQLRYSIQNVAHAQKESEVK 858


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,362
Number of Sequences: 5004
Number of extensions: 21068
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 5
length of query: 136
length of database: 2,362,478
effective HSP length: 66
effective length of query: 70
effective length of database: 2,032,214
effective search space: 142254980
effective search space used: 142254980
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)