Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000334-TA|BGIBMGA000334-PA|IPR000618|Insect cuticle
protein
         (136 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11369-1|AAA36418.1|  258|Homo sapiens protocadherin 42 protein.       38   0.015
AB006757-1|BAA25196.1| 1200|Homo sapiens PCDH7 (BH-Pcdh)c protein.     37   0.026
AC110766-1|AAY40944.1|   64|Homo sapiens unknown protein.              36   0.035
BC028165-1|AAH28165.1| 1159|Homo sapiens protocadherin 17 protein.     34   0.19 
AL445288-1|CAI17092.1| 1159|Homo sapiens protocadherin 17 protein.     34   0.19 
AL445216-1|CAH71250.1| 1159|Homo sapiens protocadherin 17 protein.     34   0.19 
AF029343-1|AAB84144.1|  889|Homo sapiens protocadherin 68 protein.     34   0.19 
AJ347130-1|CAC87530.1|   91|Homo sapiens immunoglobulin heavy ch...    28   9.2  

>L11369-1|AAA36418.1|  258|Homo sapiens protocadherin 42 protein.
          Length = 258

 Score = 37.5 bits (83), Expect = 0.015
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 37  QQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISLNYVAD 96
           Q++    Q SY  D+G++  ET S K +SGP    + + +  +  T PDG++  + +  +
Sbjct: 69  QELQDPSQHSYY-DSGLEESETPSSKSSSGPRLGPLALPEDHYERTTPDGSIGEMEHPEN 127

Query: 97  D 97
           D
Sbjct: 128 D 128


>AB006757-1|BAA25196.1| 1200|Homo sapiens PCDH7 (BH-Pcdh)c protein.
          Length = 1200

 Score = 36.7 bits (81), Expect = 0.026
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 27   TAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDG 86
            T  ++ Q  D    GS Q  Y  D+G++  ET S K +SGP    + + +  +  T PDG
Sbjct: 1017 TFSVVSQPQDPH-QGSLQSCY--DSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDG 1073

Query: 87   TVIS 90
            +V S
Sbjct: 1074 SVDS 1077


>AC110766-1|AAY40944.1|   64|Homo sapiens unknown protein.
          Length = 64

 Score = 36.3 bits (80), Expect = 0.035
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 27 TAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDG 86
          T  ++ Q  D    GS Q  Y  D+G++  ET S K +SGP    + + +  +  T PDG
Sbjct: 6  TFSVVSQPQDPH-QGSLQSCY--DSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDG 62

Query: 87 TV 88
          +V
Sbjct: 63 SV 64


>BC028165-1|AAH28165.1| 1159|Homo sapiens protocadherin 17 protein.
          Length = 1159

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 65  SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 100
           + P    V + QGA S  AP GTVI+L  V D D G
Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382


>AL445288-1|CAI17092.1| 1159|Homo sapiens protocadherin 17 protein.
          Length = 1159

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 65  SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 100
           + P    V + QGA S  AP GTVI+L  V D D G
Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382


>AL445216-1|CAH71250.1| 1159|Homo sapiens protocadherin 17 protein.
          Length = 1159

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 65  SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 100
           + P    V + QGA S  AP GTVI+L  V D D G
Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382


>AF029343-1|AAB84144.1|  889|Homo sapiens protocadherin 68 protein.
          Length = 889

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 65  SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 100
           + P    V + QGA S  AP GTVI+L  V D D G
Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382


>AJ347130-1|CAC87530.1|   91|Homo sapiens immunoglobulin heavy
          chain variable region protein.
          Length = 91

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 28 AEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSY 81
          A  +K  F    D S   +Y   N +K E+T        P + D+++   AF Y
Sbjct: 31 AASVKGRFTISRDDSKSIAYLQMNSLKTEDTAVYYCTRVPPSLDIVVVPAAFCY 84


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.312    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,496,835
Number of Sequences: 224733
Number of extensions: 724840
Number of successful extensions: 1057
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 8
length of query: 136
length of database: 73,234,838
effective HSP length: 82
effective length of query: 54
effective length of database: 54,806,732
effective search space: 2959563528
effective search space used: 2959563528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)