Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000334-TA|BGIBMGA000334-PA|IPR000618|Insect cuticle
protein
         (136 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    77   7e-17
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   0.88 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.88 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 77.0 bits (181), Expect = 7e-17
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 4/106 (3%)

Query: 24  SDQTAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTA 83
           +D+ A I  Q  +   DG+Y  ++ET NGI  +E+G  K+    D    +++QG+ SYTA
Sbjct: 23  ADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQV---DNETPVVSQGSDSYTA 79

Query: 84  PDGTVISLNYVADDDGGFKPEGAHLXXXXXXXXAIQKALDFLATAP 129
           PDG  +S+ YVAD++ GF+ +G+H+         IQ+AL++ A  P
Sbjct: 80  PDGQQVSITYVADEN-GFQVQGSHIPTAPPIPPEIQRALEWNAAHP 124


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 52  GIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISL 91
           G+K   T +L K S P+     + Q  FSY    G +++L
Sbjct: 262 GLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVAL 301


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 52  GIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISL 91
           G+K   T +L K S P+     + Q  FSY    G +++L
Sbjct: 315 GLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVAL 354


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 129 PPPPSSRN 136
           PPPPS++N
Sbjct: 765 PPPPSAQN 772


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,457
Number of Sequences: 429
Number of extensions: 1337
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 136
length of database: 140,377
effective HSP length: 52
effective length of query: 84
effective length of database: 118,069
effective search space:  9917796
effective search space used:  9917796
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)