GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000334-TA|BGIBMGA000334-PA|IPR000618|Insect cuticle
protein
         (136 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7906| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.19 
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.33 
SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.33 
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   0.58 
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.77 
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   28   2.3  
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    27   7.2  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_7906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 26  QTAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYT 82
           +TAE  K DF +QV  + + +   D+ +K+  TG   K   PD +  ++A+G F  T
Sbjct: 69  KTAEDNKADFPKQVSETVRRNVYVDDCLKSVATGEEAKKLVPDLT-TLLARGGFRLT 124


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 19   PQPQKSDQTAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGS 60
            P P  +D    +I +++   VD S    Y  DN + A ETGS
Sbjct: 2737 PDPLTADPATVVIAEEWQMIVDASVDIDYPDDNSVGA-ETGS 2777


>SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 26  QTAEIIKQDFDQQVDGSYQFSY---ETDNGIKAEETGSLKKASGPDASDVIIAQGAF 79
           Q A +IK+DF+   D  +Q SY    T + I  ++  ++ K++  ++   ++ QG+F
Sbjct: 196 QAAGVIKEDFESYRDQGFQVSYFQTFTPSSISNKQLKNILKSAAKESFVSVLLQGSF 252


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 26   QTAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYT 82
            +TAE  K DF +QV  + + ++  D+ +K+  T    K   PD +  ++A+G F  T
Sbjct: 1285 KTAEDNKADFPKQVSETVRRNFYVDDCLKSVATQEEAKKLVPDLT-TLLARGGFRLT 1340


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 29  EIIKQDFDQQVDG-SYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGT 87
           ++++ DF   +DG    F YE    +         + SG  A  +++A+G +     +  
Sbjct: 623 DVLRTDFSN-IDGYPMDFFYEYTGSLNHSRPVFAVERSGQQAQQIVLARGGYEGCCSEAR 681

Query: 88  VISLN 92
           V+S+N
Sbjct: 682 VLSIN 686


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 53   IKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISLNYVAD 96
            +  E T  ++   G D    +  Q   +YTA DGTV+ L    D
Sbjct: 971  VPQESTSPIEVPRGTDTPAQVHHQPGLTYTAHDGTVVQLRQKDD 1014


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 50  DNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISLN--YVADDDG 99
           D GI A++ G +    G  A D +IA       A D  + + +    ADDDG
Sbjct: 642 DGGIAADDDGDVADDGGIAADDDVIAADDDGIVADDDGIAADDDGIAADDDG 693


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 19  PQPQKSDQTAEIIKQDFDQ----QVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVII 74
           PQ Q+    A +  Q  DQ    Q      F++        E+   L  +  P    +  
Sbjct: 903 PQTQQFSDQAYLTNQPSDQALSFQSSKDQSFTFNDQTSQPGEQAPYLPASEQPSNQALRA 962

Query: 75  AQGAFSYTAPD 85
            QGA SY +P+
Sbjct: 963 PQGAVSYASPE 973


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,333,744
Number of Sequences: 59808
Number of extensions: 159827
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 9
length of query: 136
length of database: 16,821,457
effective HSP length: 75
effective length of query: 61
effective length of database: 12,335,857
effective search space: 752487277
effective search space used: 752487277
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)