GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000334-TA|BGIBMGA000334-PA|IPR000618|Insect cuticle
protein
         (136 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80450-10|AAB37834.1|  417|Caenorhabditis elegans Temporarily as...    29   0.88 
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass...    29   0.88 
AC006772-1|AAF60610.3|  326|Caenorhabditis elegans Hypothetical ...    29   1.2  
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AF024501-11|AAB70366.2|  443|Caenorhabditis elegans Hypothetical...    27   4.7  
Z22181-13|CAA80184.3|  632|Caenorhabditis elegans Hypothetical p...    27   6.2  

>U80450-10|AAB37834.1|  417|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform b protein.
          Length = 417

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 30  IIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVI 73
           ++++D     D + QFS      I     G LKK++G D S++I
Sbjct: 89  VMEEDVGGGTDANEQFSRVIQRQISGAGGGILKKSNGKDTSEII 132


>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform a protein.
          Length = 1112

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 30  IIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVI 73
           ++++D     D + QFS      I     G LKK++G D S++I
Sbjct: 784 VMEEDVGGGTDANEQFSRVIQRQISGAGGGILKKSNGKDTSEII 827


>AC006772-1|AAF60610.3|  326|Caenorhabditis elegans Hypothetical
           protein Y46D2A.2 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 39  VDGSYQFSYETDNGIKAEETGSL-----KKASGPDASDVIIAQG-AFSYTAPDGTVISLN 92
           +DG    S    N   +  TG L     K+A  P  S  +I Q    S T P+ TV+ LN
Sbjct: 83  IDGGLVISTSNSNADTSGLTGFLYLTTKKQADDPAFSVYVIKQAQTVSTTQPNSTVVILN 142

Query: 93  YVADDDGGF 101
              D+D  F
Sbjct: 143 TELDNDAFF 151


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
            R07G3.3a protein.
          Length = 1982

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 29   EIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTV 88
            E+++ + D++ D     S+  D   + EE    +     D  DV++        A D   
Sbjct: 1771 EVLEDEMDEEEDDD---SFGNDEEFEDEE----EIPEDDDDDDVVVLSDGDDEPANDNDE 1823

Query: 89   ISLNYVADDDG 99
             SLN + DDDG
Sbjct: 1824 ESLNDIDDDDG 1834


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
            R07G3.3b protein.
          Length = 1987

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 29   EIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTV 88
            E+++ + D++ D     S+  D   + EE    +     D  DV++        A D   
Sbjct: 1776 EVLEDEMDEEEDDD---SFGNDEEFEDEE----EIPEDDDDDDVVVLSDGDDEPANDNDE 1828

Query: 89   ISLNYVADDDG 99
             SLN + DDDG
Sbjct: 1829 ESLNDIDDDDG 1839


>AF024501-11|AAB70366.2|  443|Caenorhabditis elegans Hypothetical
           protein F39E9.1 protein.
          Length = 443

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 39  VDGSYQFSYETDNGIKAEETGSL-----KKASGPDASDVIIAQG-AFSYTAPDGTVISLN 92
           +DG    S    N   +  TG L     K+   P  S  +I Q    S T P+ TV+ LN
Sbjct: 187 IDGGLVISTSNTNSDTSGLTGFLYLTTKKQTDDPAFSVYVIRQAQTVSTTQPNSTVVILN 246

Query: 93  YVADDDGGF 101
              D+D  F
Sbjct: 247 TELDNDAFF 255


>Z22181-13|CAA80184.3|  632|Caenorhabditis elegans Hypothetical
           protein ZK632.7 protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 21  PQKSDQTAEIIKQDFDQ-QVDG----SYQFSYETDNGIKAEETGSLKKASGPDASDVIIA 75
           PQ + Q   + +  +D+ Q++     +Y ++  T+ G   E+     +A  PD S ++  
Sbjct: 118 PQMAQQPPTLQQSAYDRYQLENRGGTTYFYTEPTEAGPDDEQ---YTEAEAPDGSILVNT 174

Query: 76  QGAFSYTAP 84
            GAF Y AP
Sbjct: 175 PGAFGYNAP 183


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,377
Number of Sequences: 27539
Number of extensions: 127643
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 12,573,161
effective HSP length: 74
effective length of query: 62
effective length of database: 10,535,275
effective search space: 653187050
effective search space used: 653187050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)