GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000333-TA|BGIBMGA000333-PA|IPR000618|Insect cuticle
protein
         (174 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    28   0.049
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   1.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   4.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 0.049
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 109  NPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPV 155
            +P A+    QGS S  S EGVP+    V   +G    G+    SPPV
Sbjct: 1086 DPVALKSAQQGSSS--SSEGVPLKGTAVPPPSGSSGPGSTGSKSPPV 1130


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 146 GNAIPTSPPVPEQIARALAYIAKNIP 171
           G+    +P   +QI + LA++ KN P
Sbjct: 75  GSCPQCTPQEMKQIQKVLAFVQKNYP 100


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 73  VKFGNEINPDGSYTYFY 89
           +KFG + +P+G Y   Y
Sbjct: 429 IKFGRKADPNGDYIRKY 445


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 138 DENGYQPTGNAIPTSPPVPEQIA 160
           D+NG++   N   T P V  Q+A
Sbjct: 78  DQNGFRNFTNLKKTHPKVKLQVA 100


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 115 VVAQGSFSWTSPEGVPISVNYVADENGY 142
           +V  G F+      VPI+V    DE  Y
Sbjct: 313 IVFNGLFTEEDVADVPINVTLSLDEKKY 340


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,977
Number of Sequences: 317
Number of extensions: 2447
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 174
length of database: 114,650
effective HSP length: 53
effective length of query: 121
effective length of database: 97,849
effective search space: 11839729
effective search space used: 11839729
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)