Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000332-TA|BGIBMGA000332-PA|IPR000618|Insect cuticle
protein
         (166 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    83   1e-18
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   4.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 83.4 bits (197), Expect = 1e-18
 Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 3/104 (2%)

Query: 57  EQAAETISYQNEILPDGSYSHGFETNNGISAQAQGTPRDFGGNPPVVPVVSQGSFAWTSP 116
           ++ A   S Q E+  DG+Y + FET+NGIS Q  G P+         PVVSQGS ++T+P
Sbjct: 24  DKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNE---TPVVSQGSDSYTAP 80

Query: 117 EGQPIVITYIADENGYQPQGDAXXXXXXXXEAILRALDFIARNP 160
           +GQ + ITY+ADENG+Q QG            I RAL++ A +P
Sbjct: 81  DGQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHP 124


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 48  ILPNRVATNEQAAETISYQNE 68
           +L NR+  +E  +ET  Y ++
Sbjct: 574 VLYNRLVVSEDGSETFKYSSQ 594


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,101
Number of Sequences: 429
Number of extensions: 1805
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 166
length of database: 140,377
effective HSP length: 53
effective length of query: 113
effective length of database: 117,640
effective search space: 13293320
effective search space used: 13293320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)
S2: 41 (20.6 bits)