GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000332-TA|BGIBMGA000332-PA|IPR000618|Insect cuticle
protein
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.088
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   4.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.8  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    25   5.8  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 31.1 bits (67), Expect = 0.088
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 59  AAETISYQNEILPDGSY-SHGFETNNGISAQAQGTPRDFGGNPPVVPVVSQGSFAWTSPE 117
           +A T S  + I+P  ++ S GF T +G+   +  TP     N  V P  +  S  + +  
Sbjct: 666 SASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSASTPL---SNSTVAPTSTFTSSGFNTTS 722

Query: 118 GQPI--VITYIADENGYQPQGDA 138
           G P   V T +++ + Y   G +
Sbjct: 723 GLPTSSVSTPLSNSSAYPSSGSS 745



 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 59  AAETISYQNEILPDGSY-SHGFETNNGISAQAQGTPRDFGGNPPVVPVVSQGSFAWTSPE 117
           +A T    + + P  ++ S GF T +G+   +  TP     N  +VP  +  S  + +  
Sbjct: 635 SASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTP---SSNSSIVPTSTFTSSGFNTTS 691

Query: 118 GQP 120
           G P
Sbjct: 692 GLP 694


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 49  LPNRVATNEQAAETISYQNEILPDGSYSHGFETNNGISAQAQGTP 93
           L N+ + N+ A E+   +  ++P   YSH F  +  + A     P
Sbjct: 331 LVNKDSENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLP 375


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 54  ATNEQAAETISYQNEILPDGSYSHGFETNNGISAQAQGTPRDF-GGNPPVVPVVSQGS 110
           + N   A      +   P+ +YS    +N+   A ++G    F GG PP VP +  GS
Sbjct: 546 SVNNAGARLTLRDSGAAPEATYSLRQPSNH---AYSEGRSYTFTGGQPPSVPTMPYGS 600


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 92  TPRDFGGNPPVVPVVSQGSFAWT 114
           T  D  GNPP++ +  + SF W+
Sbjct: 112 TEVDLYGNPPILKLQLRDSFVWS 134


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,707
Number of Sequences: 5004
Number of extensions: 23248
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 6
length of query: 166
length of database: 2,362,478
effective HSP length: 68
effective length of query: 98
effective length of database: 2,022,206
effective search space: 198176188
effective search space used: 198176188
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)