GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000332-TA|BGIBMGA000332-PA|IPR000618|Insect cuticle
protein
         (166 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0066 - 16145398-16145475,16145638-16145700,16146432-161465...    29   2.5  
10_08_0108 + 14860469-14861032                                         28   3.3  

>06_03_0066 -
           16145398-16145475,16145638-16145700,16146432-16146518,
           16147168-16147246,16147359-16147478,16149289-16149440
          Length = 192

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 85  ISAQAQGTPRDFGGNPPVVPVVSQGSFAWTSPEGQPIVITY 125
           + A   G P+D G +  ++P  S+  F     EG+P+V+ +
Sbjct: 49  VGAYYTGYPKDLGPSR-IIPFTSERQFVQLLHEGRPVVVAF 88


>10_08_0108 + 14860469-14861032
          Length = 187

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 92  TPRDFGGN-PPVVPVVSQGSFAWTSPEGQPIVIT 124
           TP D GGN PPV+P ++ G        G P V T
Sbjct: 108 TPLDAGGNAPPVLPALNGGQPGEEEAAGTPRVAT 141


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,966,800
Number of Sequences: 37544
Number of extensions: 168553
Number of successful extensions: 241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 2
length of query: 166
length of database: 14,793,348
effective HSP length: 77
effective length of query: 89
effective length of database: 11,902,460
effective search space: 1059318940
effective search space used: 1059318940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)