GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000332-TA|BGIBMGA000332-PA|IPR000618|Insect cuticle
protein
         (166 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61690.1 68416.m06913 expressed protein                             31   0.52 
At5g26680.1 68418.m03171 endonuclease, putative similar to Swiss...    27   8.4  
At4g21326.1 68417.m03081 subtilase family protein contains simil...    27   8.4  
At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TO...    27   8.4  
At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TO...    27   8.4  
At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TO...    27   8.4  

>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 59   AAETISYQNEILPDGSYSHGFETNNGISAQAQGTPRDFGGNPPVV-PVVSQGSFAWTSPE 117
            +AE +  +N+IL     SH      G S Q    P      P VV P   QG   W  P 
Sbjct: 995  SAEQVERKNDILNGDFISHWQNLQYGRSCQNSQHPPVLYPAPVVVPPAYLQGRLPWDGP- 1053

Query: 118  GQPIVIT 124
            G+P+  T
Sbjct: 1054 GRPLAYT 1060


>At5g26680.1 68418.m03171 endonuclease, putative similar to
           Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor
           1) (MF1) [Homo sapiens]
          Length = 453

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 100 PPVVPVVSQGSFAWTSPEGQPIVITYIADENGY 132
           P V+    Q    WTSP+ + IV  ++ +ENG+
Sbjct: 287 PDVITDEEQLDIKWTSPDEEGIV-QFLVNENGF 318


>At4g21326.1 68417.m03081 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 690

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 75  YSHGFETNN-GISAQAQGTPRDFGGNPPVVPVVSQGSF 111
           ++ GF+ NN GIS +   +PR + G+  +V  ++  SF
Sbjct: 139 FTDGFDENNSGISEEDFMSPRGYRGHGTMVSSIAASSF 176


>At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TOC2)
           identical to pseudo-response regulator 2 GI:7576356 from
           [Arabidopsis thaliana]
          Length = 487

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 88  QAQGTPRDFGGNPPVVPVVSQGSFAWTSPEGQPIVITYIADEN 130
           Q+ G P  +   PP  P VS    AW  P G P+  +YI   N
Sbjct: 414 QSIGQPPPWHWKPPY-PTVSGN--AWGCPVGPPVTGSYITPSN 453


>At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TOC2)
           identical to pseudo-response regulator 2 GI:7576356 from
           [Arabidopsis thaliana]
          Length = 535

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 88  QAQGTPRDFGGNPPVVPVVSQGSFAWTSPEGQPIVITYIADEN 130
           Q+ G P  +   PP  P VS    AW  P G P+  +YI   N
Sbjct: 414 QSIGQPPPWHWKPPY-PTVSGN--AWGCPVGPPVTGSYITPSN 453


>At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TOC2)
           identical to pseudo-response regulator 2 GI:7576356 from
           [Arabidopsis thaliana]
          Length = 535

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 88  QAQGTPRDFGGNPPVVPVVSQGSFAWTSPEGQPIVITYIADEN 130
           Q+ G P  +   PP  P VS    AW  P G P+  +YI   N
Sbjct: 414 QSIGQPPPWHWKPPY-PTVSGN--AWGCPVGPPVTGSYITPSN 453


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,137
Number of Sequences: 28952
Number of extensions: 127827
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 6
length of query: 166
length of database: 12,070,560
effective HSP length: 76
effective length of query: 90
effective length of database: 9,870,208
effective search space: 888318720
effective search space used: 888318720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)