Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000331-TA|BGIBMGA000331-PA|IPR000618|Insect cuticle
protein
         (210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    29   0.66 
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    28   0.88 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   2.0  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    26   3.5  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    26   3.5  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   3.5  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   6.2  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   8.2  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 95  PSVATVTYRPPVVSTYRPLVYSSTVKPLAYRTQYVN---DGSANIIRQDNDVDVNAYHFA 151
           PS   V+      +T R +V S + +  A   +YV+   DG + ++  +N+ D + YH  
Sbjct: 88  PSFGKVSPNVTWHTTLRNIVMSQSGRFSANLYEYVDGNSDGISFVLNLENNNDTSVYHMT 147

Query: 152 YETDNGIAAEE-SGSVEPTVNGGG 174
           +  D         GS + T N GG
Sbjct: 148 FHGDRVKPINVFLGSTDVTPNFGG 171


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 127 QYVNDGSANIIRQDNDVDVNA-YHFAYETDNGIAAEESGSVEP 168
           +++ND   N++  D+DV  NA +H   E+    + E     +P
Sbjct: 67  EWINDNECNVVYADDDVSRNALFHLIMESPTEFSEELEYQTKP 109


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 10/70 (14%)

Query: 85  YGNGIEQTAEPSVATVTYRPPVVSTYRPLVYSSTVKPLAYRTQYVNDGSANI----IRQD 140
           Y N I  +  PS   +TY PP +    P+   +T+ P+ Y++   +D ++ +      Q 
Sbjct: 267 YYNEIASSPNPSTTKITYNPPKL----PMKDFATL-PIGYQSTCDSDETSELSSTSSEQT 321

Query: 141 NDVD-VNAYH 149
           +DV+ +NAY+
Sbjct: 322 SDVEGLNAYN 331


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 30  DGSYYPTNDGKYINSFDGRYRSLLNR--NSKYQSIYNAY 66
           D S +P+NDGK   S    Y+S  +   +S  QSI++++
Sbjct: 206 DSSKHPSNDGKIPESKPSVYKSRASNLFSSNEQSIHSSF 244


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 86  GNGIEQTAEPSVATVTYRPPVVSTYRP 112
           G GI ++  P V TV    PV++ Y P
Sbjct: 74  GAGIVESVGPQVTTVQVGDPVIALYTP 100


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 78  LLTPFVKYGNGIEQTAEPSVATVTYRPPVVSTYRPLVYSSTVKPL---AYRTQYVNDGSA 134
           L  P + + N + Q   P+V+T+ YR  ++   R LV   T++ L   AY T    DG+ 
Sbjct: 311 LAGPIISFNNFMSQMKYPTVSTLKYR-NLLYAIRFLVCVLTMEFLLHYAYVTAISKDGNW 369

Query: 135 N 135
           N
Sbjct: 370 N 370


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 89  IEQTAEPSVATVTYRPPVVSTYRPLVYSSTVKPL 122
           +E T  P+V T T      +T  P+V ++T+ P+
Sbjct: 96  VETTTIPTVETTTTPMVETTTITPMVETTTITPM 129


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 133 SANIIRQDNDVDVNAYHFAYETDNGIAAEESGSVEPTVNGG------GTRTRGFYEYVGD 186
           +++I R + D +V  +H   +       EE+ +++P +NG       G R       + D
Sbjct: 409 NSDIQRLNKDEEVTWFHVLVKHIEEYGMEEAYNIQPIINGNEITRILGIRPGPHLRKMLD 468

Query: 187 DGLKYRV 193
           D +++R+
Sbjct: 469 DSIEWRI 475


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,085,403
Number of Sequences: 5004
Number of extensions: 49825
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 10
length of query: 210
length of database: 2,362,478
effective HSP length: 70
effective length of query: 140
effective length of database: 2,012,198
effective search space: 281707720
effective search space used: 281707720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)