Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000331-TA|BGIBMGA000331-PA|IPR000618|Insect cuticle
protein
         (210 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.075
SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_45865| Best HMM Match : Adeno_E4_34 (HMM E-Value=6)                 29   3.7  
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)                 28   6.5  
SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)                       28   6.5  

>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 37/186 (19%), Positives = 61/186 (32%), Gaps = 8/186 (4%)

Query: 21  GKYRPEIYGD-GSYYPTNDGKYINSFDGRYRSLLNR--NSKYQSIYNAYQPYYAKALNQQ 77
           G Y  E   +  + Y     +Y N ++  Y +  N   N++Y + Y  Y   Y    N  
Sbjct: 243 GVYNTEYNNEYNTEYNNEYNEYNNDYNTEYNNEYNTEYNTEYNTEYTEYNTEYNTEYNTD 302

Query: 78  LLTPF-VKYGN--GIEQTAEPSVATVTYRPPVVSTYRPLVYSSTVKPLAYRTQYVNDGSA 134
             T +  +Y      E   E +     Y     + Y      +T     Y T+Y  + + 
Sbjct: 303 YNTEYNTEYNTEYNTEYNTEYNTEYTEYNTEYNTEYN--TDYNTEYNTEYNTEYNTEYNT 360

Query: 135 NIIRQDNDVDVNAYHFAYETDNGIAAEESGSVEPTVNGGGTRTRGFYEYVGDDGLKYRVD 194
             I + N      Y+  Y T+         + E         T    EY+ +    Y  D
Sbjct: 361 EYITEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYITEYITEYNTDYNTD 420

Query: 195 YTADEN 200
           Y  + N
Sbjct: 421 YNTEYN 426


>SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 78  LLTPFVKYGNGIEQTAEPSVATVTYRPPVVSTY 110
           ++ PF + G GI+ TA+ S+ + + RPPV+ +Y
Sbjct: 450 VVLPFRQEG-GIDDTAQDSIISSSDRPPVLPSY 481


>SB_45865| Best HMM Match : Adeno_E4_34 (HMM E-Value=6)
          Length = 766

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 47 GRYRSLLNRNSKYQSIYNAYQPYYAKALNQQ 77
          GR   LLN  S Y+S+Y+A   YY    +Q+
Sbjct: 59 GRTVILLNLESLYESLYDALNQYYVYCADQK 89


>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 295

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 42  INSFDGRYRSLLNRNSKYQSIYNAYQPYYAKALNQQLLTPFVKYGNGIEQTAEPSVATVT 101
           IN+FDG     +       ++YN  +    K  +Q++ T +VK    ++   +  + T T
Sbjct: 197 INAFDGFAVEFMKNKDGRDNVYNNAKSAVDKQDDQKMATYYVKVMERVQSKGDSFIQTET 256

Query: 102 YR 103
            R
Sbjct: 257 SR 258


>SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)
          Length = 512

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 121 PLAYRTQYVNDGSANIIRQDNDVDVNAYHFAYETDNGIAAEESGSVEPTVN 171
           P +   ++ ++G   + R DND     +  A+E +N I     G+V  T N
Sbjct: 13  PQSITEKFQDEGQFVLSRTDNDFSAMPFDQAHEQENKIVKSAGGAVGLTEN 63



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 121 PLAYRTQYVNDGSANIIRQDNDVDVNAYHFAYETDNGIAAEESGSVEPTVN 171
           P +   ++ ++G   + R DND     +  A+E +N I     G+V  T N
Sbjct: 448 PQSITEKFQDEGQFVLSRTDNDFSAMPFDQAHEQENKIVKSAGGAVGLTEN 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,977,700
Number of Sequences: 59808
Number of extensions: 361219
Number of successful extensions: 819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 6
length of query: 210
length of database: 16,821,457
effective HSP length: 79
effective length of query: 131
effective length of database: 12,096,625
effective search space: 1584657875
effective search space used: 1584657875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)