Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000331-TA|BGIBMGA000331-PA|IPR000618|Insect cuticle
protein
         (210 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    53   2e-09
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    29   0.043

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 53.2 bits (122), Expect = 2e-09
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 131 DGSANIIRQDNDVDVNA-YHFAYETDNGIAAEESGSVEPTVNGGGTRTRGFYEYVGDDGL 189
           D  A I  Q  +V+ +  Y   +ET NGI+ +ESG  +   N     ++G   Y   DG 
Sbjct: 24  DKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQ 83

Query: 190 KYRVDYTADENGFKPVGAHLP 210
           +  + Y ADENGF+  G+H+P
Sbjct: 84  QVSITYVADENGFQVQGSHIP 104


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 0.043
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 13  SRSQAQDDGKYRPEI----YGDGSYYPT-NDGKYINSFDGRYRSLLNRNSKYQSIYNAYQ 67
           SRS+ ++   Y+ E     YG+ S   + N  +   S + +  S L+ N  Y +  N Y+
Sbjct: 273 SRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYK 332

Query: 68  PYYAKALN-QQLLTPFVKY-GNGIEQTAEPSVATVTYRPPVVSTYRPLVYSSTVKPLAYR 125
           P Y   +N +Q+  P   Y GN   +   P ++     P       P  +   + P AYR
Sbjct: 333 PLYYNIINIEQIPVPVPIYCGNFPPRPMGPWISIQEQIPRFRHIGPPTPFPRFIPPNAYR 392


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,885
Number of Sequences: 429
Number of extensions: 3673
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 210
length of database: 140,377
effective HSP length: 55
effective length of query: 155
effective length of database: 116,782
effective search space: 18101210
effective search space used: 18101210
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)