Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000331-TA|BGIBMGA000331-PA|IPR000618|Insect cuticle
protein
         (210 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g12505.1 68415.m01352 hypothetical protein                          33   0.11 
At5g36840.1 68418.m04414 hypothetical protein similar to At3g243...    29   2.3  
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    29   2.3  
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    28   4.0  
At5g26080.1 68418.m03103 proline-rich family protein contains pr...    28   5.3  
At5g57090.1 68418.m07128 auxin transport protein (EIR1) identica...    27   9.3  
At1g16110.1 68414.m01931 wall-associated kinase, putative contai...    27   9.3  

>At2g12505.1 68415.m01352 hypothetical protein
          Length = 344

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 104 PPVVSTYRPLVYSSTVKPLAYRTQYVND 131
           P V+ TY P V   T++PLAYRT +V+D
Sbjct: 11  PSVLQTYAPSVPWWTIEPLAYRTIHVSD 38


>At5g36840.1 68418.m04414 hypothetical protein similar to At3g24380,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790
          Length = 434

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 59  YQSIYNAYQPYYAKALNQQLLTPFVKYGNGIEQTAEPS--------VATVTYRPPVVSTY 110
           + S + A +   A+ + +++L    KYGN ++ T   S        V+T     P  STY
Sbjct: 148 FGSNHYALESEDARDICEEVLEDIKKYGNTLKYTYANSFSFPECVDVSTPECAEPYCSTY 207

Query: 111 RPLVYSSTVKPLAYRTQYVNDGSANIIR 138
            P   +ST   +  R +Y  D    I+R
Sbjct: 208 MPYKQTSTQPSVRERNEYFVDVHGAIMR 235


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 115 YSSTVKPLAYRTQYVNDGSANIIRQDNDVDVNAYHFAYETDNGIAAEESGSVEPTVNGGG 174
           Y   V PL + +  ++DGSA  I + +D +VN +        G+++++    EP V    
Sbjct: 584 YLPRVMPLVFASCNLDDGSAVDIDESDDENVNDF-------GGVSSDDDADDEPRVRNIS 636

Query: 175 TRT 177
            RT
Sbjct: 637 VRT 639


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 83  VKYGNGIEQTAEPSVATVTYRPPVVSTYRPLVYSSTVKPLAYRTQYVNDGSANII 137
           V++GN +E     S A+V        TY PL Y++T   + Y++  +   SAN+I
Sbjct: 391 VQFGNRVEARKSSSSASVN-----PGTYAPLYYTNTHPGMVYQSYPLMWKSANMI 440


>At5g26080.1 68418.m03103 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 141

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 50  RSLLNRNSKYQSIYNAYQPYYAKALNQQLLTPFVKYGNGIEQTAEPSVATVTYRPPVVST 109
           R LL   + YQ IY+   P Y   +   +  P   Y   +     P +    Y PP    
Sbjct: 27  RKLLQTTTNYQPIYSPPPPPYRSPVT--IPPPPPVYSRPVAFPPPPPI----YSPPPPPI 80

Query: 110 YRPLVYSSTVKPL 122
           Y P +YS    P+
Sbjct: 81  YPPPIYSPPPPPI 93


>At5g57090.1 68418.m07128 auxin transport protein (EIR1) identical
           to auxin transport protein EIR1 [Arabidopsis thaliana]
           gi|3377507|gb|AAC39513; identical to root gravitropism
           control protein [Arabidopsis thaliana]
           gi|4322486|gb|AAD16060
          Length = 647

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 46  DGRYRSLLNRNSKYQSIYNAYQPYYAKALNQQLLTPFVKYGNGIE 90
           DG+   ++ R+S   S+ +++   +   LN  ++TP      G+E
Sbjct: 199 DGKLHVVVRRSSAASSMISSFNKSHGGGLNSSMITPRASNLTGVE 243


>At1g16110.1 68414.m01931 wall-associated kinase, putative contains
           similarity to wall-associated kinase 2 GI:4826399 from
           [Arabidopsis thaliana]
          Length = 642

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 25  PEIYGDGSYYPTNDGKYINSFDGRYRSLLN-RNSKYQSIYNAY 66
           PE +  G Y     G Y ++ D RYR+ L  RN    S Y+++
Sbjct: 244 PEQFHAGGYAVVELGWYFDTSDSRYRNPLGCRNMTRYSSYSSF 286


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,501,166
Number of Sequences: 28952
Number of extensions: 249397
Number of successful extensions: 392
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 8
length of query: 210
length of database: 12,070,560
effective HSP length: 78
effective length of query: 132
effective length of database: 9,812,304
effective search space: 1295224128
effective search space used: 1295224128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)