GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000330-TA|BGIBMGA000330-PA|undefined
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    27   2.1  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   2.1  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   6.5  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.6  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    25   8.6  

>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 204 NFKVNETSEFVTQYPPTVNLPNGE 227
           +F VN  S+F+ Q+P   NLP+ +
Sbjct: 18  SFGVNSVSDFLAQFPIPTNLPSNK 41


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 166 YVSFDGLHFGNEYDSSSNHFKKVYADKEIAVKCKYLTPNFKVNETSEFVTQYPPTVNLPN 225
           Y SFD L    +  +   H + V + +   +  K L PN K+ +  E +  YPP+  L  
Sbjct: 227 YSSFD-LELNLDSPAELKHRRLVRSQRNGPLD-KDLKPNSKIRKELESILSYPPSEELSL 284

Query: 226 GEK 228
            EK
Sbjct: 285 EEK 287


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 206 KVNETSEFVTQYPPTVNLPNGEKFGSYYSFRGTKILDTV 244
           + N+  +F+T  P ++N P        YS +GT I + V
Sbjct: 99  RTNKWDKFLTVLPLSINTPAQWPEKEVYSLQGTSIFNPV 137


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 200 YLTPNFKVNETSEFVTQYPPTVN------LPNGEKFGSYYSFRGTKILDTVANSL 248
           Y TP   +N ++E +  YPP         LP+     + YSF G+ IL T + SL
Sbjct: 122 YSTPYTTMNPSNE-MHPYPPATFENNYSVLPDHSSQPNAYSFTGSNILPTQSPSL 175


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 178 YDSSSNHFKKVYADKEIAVKCKYLTPN 204
           YDS+S  F+K    ++  + CK+L PN
Sbjct: 312 YDSASLKFRKSLPHEQAVIDCKFL-PN 337


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.139    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 975,534
Number of Sequences: 5004
Number of extensions: 37123
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 5
length of query: 267
length of database: 2,362,478
effective HSP length: 72
effective length of query: 195
effective length of database: 2,002,190
effective search space: 390427050
effective search space used: 390427050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)