GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000330-TA|BGIBMGA000330-PA|undefined
         (267 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)             30   2.3  
SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_42985| Best HMM Match : MRJP (HMM E-Value=3.9)                      28   6.9  

>SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)
          Length = 339

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 156 HKVIKGLVEKYVSFDGLHFGNEYDSSSNHFKKVYADKEIAVKCKYLTPNFKVNETSEFVT 215
           + V++G  + Y   D     N +  S  H  +  + +EI   CK    +FK+ +  +F  
Sbjct: 207 YNVMQGYWDDYEKTDAAIDSNGWFHSGLHPGESSSPEEIKEFCKGQIAHFKIPKYIKFTE 266

Query: 216 QYPPTVN 222
           +YP T++
Sbjct: 267 EYPLTIS 273


>SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 168 SFDGLHFGNEYDSSSNHFKKVY-ADKEIAVKCKYLTPNFKVNETSEFV---TQYPPTVNL 223
           S++ L  G+    SSN   ++  A +E A + + +  N   NETS +      YPPTVNL
Sbjct: 94  SYEWLKDGHVITDSSNSTLEIESASREDAGRYQCVASNRIGNETSRYADVTVYYPPTVNL 153


>SB_42985| Best HMM Match : MRJP (HMM E-Value=3.9)
          Length = 317

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 43  LDEGKYIPG-DEGRYTYIYQQGLYPFDDGDYRYVHQV 78
           + EG YI    EG Y Y+  +GLY +   +  Y++ V
Sbjct: 202 VSEGHYIYSVSEGLYIYLVSEGLYIYSVSEGYYIYSV 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.139    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,819,302
Number of Sequences: 59808
Number of extensions: 254091
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 6
length of query: 267
length of database: 16,821,457
effective HSP length: 81
effective length of query: 186
effective length of database: 11,977,009
effective search space: 2227723674
effective search space used: 2227723674
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)