GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000330-TA|BGIBMGA000330-PA|undefined
         (267 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-4|AAB04967.1|  192|Caenorhabditis elegans Galectin protei...    28   8.0  
U39678-3|AAL16316.1|  137|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    28   8.0  
AB038501-1|BAB11966.1|  192|Caenorhabditis elegans galectin LEC-...    28   8.0  

>U64852-4|AAB04967.1|  192|Caenorhabditis elegans Galectin protein
           10 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 148 YASRYPY--IHKV-IKGLVE-KYVSFDGLHFGNEYDSSSNHFKKVY--ADKEIAVKCKYL 201
           Y  RYPY  +  + +KG V    V F+G HF   +D   +H    Y     E  V   ++
Sbjct: 112 YPHRYPYQSVQAIGLKGDVHVDKVHFEGFHFQRRWDGHVDHGHSGYNAYGTETYVAPVFV 171

Query: 202 TPNF 205
            PNF
Sbjct: 172 QPNF 175


>U39678-3|AAL16316.1|  137|Caenorhabditis elegans Hypothetical
           protein C39D10.8b protein.
          Length = 137

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 159 IKGLVEKYVSFDGLHFGNEYDSSSN-HFKKVYADKEIAVKCKYLTPNFKVNETSE 212
           I G ++ Y +  GL  G    SS N  FK  + D  I ++CKY   +   +ET E
Sbjct: 57  IIGAIKAYHA--GLGPGTTKVSSQNSEFKVEHTDNVITIRCKYRVQSVLAHETWE 109


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 174 FGNEYDSSSNHFKKVYADKEIAVKCKY---LTPNFKVNETSEFVTQYP--PTVNLPNGEK 228
           F   +D   N F     D+ +A  C       PNF +N+ + F  QYP  P  +  +   
Sbjct: 278 FPAPFDEKQNQFYPK-TDENLAPNCAQDASSLPNFAMNQKASFANQYPYHPYYHQYSQLD 336

Query: 229 FGSYYSFRGTKI 240
            GS Y +    I
Sbjct: 337 HGSPYQYMNNSI 348


>AB038501-1|BAB11966.1|  192|Caenorhabditis elegans galectin LEC-10
           protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 148 YASRYPY--IHKV-IKGLVE-KYVSFDGLHFGNEYDSSSNHFKKVY--ADKEIAVKCKYL 201
           Y  RYPY  +  + +KG V    V F+G HF   +D   +H    Y     E  V   ++
Sbjct: 112 YPHRYPYQSVQAIGLKGDVHVDKVHFEGFHFQRRWDGHVDHGHSGYNAYGTETYVAPVFV 171

Query: 202 TPNF 205
            PNF
Sbjct: 172 QPNF 175


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.139    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,116,627
Number of Sequences: 27539
Number of extensions: 191309
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 4
length of query: 267
length of database: 12,573,161
effective HSP length: 80
effective length of query: 187
effective length of database: 10,370,041
effective search space: 1939197667
effective search space used: 1939197667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)