GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000330-TA|BGIBMGA000330-PA|undefined
         (267 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.0  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 202 TPNFKVNETSEFVTQYPPTVNLPNGEKFGSYYSFRGTKILDTVANS 247
           T  F   +  E   QY  + ++ N + FG   S  G   L  V NS
Sbjct: 283 TEQFSNPQYEENNVQYEGSQDILNTQSFGKVVSKNGVLFLGLVGNS 328


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 229 FGSYYSFRGTKILDTVANSLKNKL 252
           +GS  + R T+I+D V N+  N+L
Sbjct: 67  WGSECTTRKTRIIDVVYNASNNEL 90


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 159 IKGLVEKYVSFDGLHFGN 176
           ++ L+ K  +FD LH GN
Sbjct: 17  LRNLIYKTEAFDSLHAGN 34


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query: 176 NEYDSSSNHFKKVYAD 191
           N Y+ ++N++KK+Y +
Sbjct: 87  NNYNYNNNNYKKLYCN 102


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query: 176 NEYDSSSNHFKKVYAD 191
           N Y+ ++N++KK+Y +
Sbjct: 87  NNYNYNNNNYKKLYCN 102


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query: 176 NEYDSSSNHFKKVYAD 191
           N Y+ ++N++KK+Y +
Sbjct: 87  NNYNYNNNNYKKLYCN 102


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.139    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,523
Number of Sequences: 429
Number of extensions: 2678
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 267
length of database: 140,377
effective HSP length: 57
effective length of query: 210
effective length of database: 115,924
effective search space: 24344040
effective search space used: 24344040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)