GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000330-TA|BGIBMGA000330-PA|undefined
         (267 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28350.1 68417.m04058 lectin protein kinase family protein co...    30   1.9  
At1g75960.1 68414.m08822 AMP-binding protein, putative similar t...    29   3.3  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   5.7  
At5g65140.1 68418.m08194 trehalose-6-phosphate phosphatase, puta...    28   7.5  

>At4g28350.1 68417.m04058 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 649

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 178 YDSSSNHFKKVYADKEIAVKCKYLTPNFKVNETSEFVTQ 216
           Y  +S  ++ V   KE+AVK   ++P   V  TSEF+ +
Sbjct: 325 YGGNSKVYRGVLEGKEVAVKRIMMSPRESVGATSEFLAE 363


>At1g75960.1 68414.m08822 AMP-binding protein, putative similar to
           AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam profile: PF00501 AMP-binding enzyme;
           identical to cDNA adenosine monophosphate binding
           protein 8 AMPBP8 (AMPBP8)  GI:20799724
          Length = 544

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 191 DKEIAVKCKYLTPNFKVNETSEFVTQYPPT 220
           DKEI   CKY  P +   +T  F+ + P T
Sbjct: 498 DKEIIEYCKYKMPRYMAPKTVSFLEELPKT 527


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 155 IHKVIKGLVEKYVSFDGLHFGNEYDSSSN--HFKKVYADKEIAVKCKYLTPNFKVNETSE 212
           I K +K  V  Y   D  H  ++ + SS+    +K Y+DKE+  K K       + E  E
Sbjct: 95  IIKKLKVCVRWYQQVDETHVQDKENLSSSLQSAEKRYSDKELDAKTKEEELRATITEMKE 154

Query: 213 FVTQYPPTVNLPNGEKFGSYYSFRGTKILDTVANSLKNKLKLEYE 257
            +      ++     K  +  + R  K    VA  L+  L+ E +
Sbjct: 155 NIESLQEKLSKEKLSKLDAIENHRREKDCRVVAEKLQVSLREELD 199


>At5g65140.1 68418.m08194 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 370

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 153 PYIHKVIKGLVEKYVSFDGLHFGNEYDSSSNHFKKVYADK--EIAVKCKYLTPNFKVNET 210
           P I +V K LVEK  S  G    N     S HF+ V   K  E+A K + +  N+   + 
Sbjct: 212 PMIDEVYKQLVEKTKSTPGAKVENNKFCLSVHFRCVDEKKWSELASKVRSVVKNYPTLKL 271

Query: 211 SE 212
           S+
Sbjct: 272 SQ 273


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.139    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,848,548
Number of Sequences: 28952
Number of extensions: 177212
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 5
length of query: 267
length of database: 12,070,560
effective HSP length: 80
effective length of query: 187
effective length of database: 9,754,400
effective search space: 1824072800
effective search space used: 1824072800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)