Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000329-TA|BGIBMGA000329-PA|IPR000618|Insect cuticle
protein
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646 33 0.44
04_03_0822 - 20054832-20055179,20056794-20056847,20057561-200576... 32 0.58
02_01_0428 - 3127098-3129254 31 1.8
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 30 3.1
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 30 3.1
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 30 3.1
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 5.4
>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
Length = 378
Score = 32.7 bits (71), Expect = 0.44
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 253 QIKASHRQSSHSKPASQPQQDHRSR-LTALPDPTARTYTASSRSIQAQSRLTVDFEQH 309
++ HR+S S+ A + +DH S LT P P A +S SI+ RL++ QH
Sbjct: 199 EMDTCHRRSRSSRIAIRHSRDHSSDCLTPAPMPPAPLSCSSPISIKQPPRLSIQRSQH 256
>04_03_0822 -
20054832-20055179,20056794-20056847,20057561-20057657,
20057752-20057780
Length = 175
Score = 32.3 bits (70), Expect = 0.58
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 234 GAHIPNASRTSATTIHAFSQIKASHRQSSHSKPASQPQQDHRSRLTALPDPTARTYTASS 293
G H A HA S HR SSH P+S P TA P A ++SS
Sbjct: 118 GGHGSGPKCVCAPATHAGSFKCRLHRSSSHGHPSSSP--------TAAAAPAAAVQSSSS 169
Query: 294 RSIQAQ 299
R++ AQ
Sbjct: 170 RTVAAQ 175
>02_01_0428 - 3127098-3129254
Length = 718
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 136 ASKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGY 175
A ++ PTY++SK P+ + Y+Y I+R + +VA G+
Sbjct: 523 ARVLILPTYMSSKKDLPALKDWKYEYRILRAEVNVARNGF 562
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 233 DGAHIPNASRTSATTIHAFSQIKASHRQSSHSKPASQPQQDHRSRLTALPDPT 285
DGA + ATT HA + A +S H A +P+ L A PD T
Sbjct: 932 DGAGVVEEDEAMATTDHAMAAAAAEEEESDHEWVA-EPEPGVLMTLVARPDGT 983
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 29.9 bits (64), Expect = 3.1
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 235 AHIPNASRTSATTIHAFSQIKASHRQSSHSKPASQPQQDHRSRLTALPDPTARTYTASSR 294
A IPN +A A + A+ ++ P S P + RL+ P PT R+ + SR
Sbjct: 11 AEIPNTDAAAAADPAAAAPAAAATDPAAAGSP-SPPLPPRKRRLSPTPSPTRRSSRSRSR 69
Query: 295 S 295
S
Sbjct: 70 S 70
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 199 ENEGIKVKGFYEYVGPDGVTYRVDYTAD 226
E G +++G +VGPDG TYR + AD
Sbjct: 90 EFRGGRIEGQGVFVGPDGATYRGAWAAD 117
>06_01_1032 +
8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 214 PDGVTYRVDYTADENGFVADGAHIPNASRTSATTIHAFSQIKASHRQSSHSKPASQPQQD 273
P G ++A +G V G PN S + IH S + S R S PAS +D
Sbjct: 123 PSGSADMARHSASISGRVPAG---PNRSDVAGADIHQGSMSQKSGRSSGMESPASLQIED 179
Query: 274 HRS 276
RS
Sbjct: 180 TRS 182
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.130 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,874,234
Number of Sequences: 37544
Number of extensions: 333989
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 7
length of query: 342
length of database: 14,793,348
effective HSP length: 83
effective length of query: 259
effective length of database: 11,677,196
effective search space: 3024393764
effective search space used: 3024393764
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -