GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000329-TA|BGIBMGA000329-PA|IPR000618|Insect cuticle
protein
         (342 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.8  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    24   1.8  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    24   1.8  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   2.4  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 289 YTASSRSIQAQSRLTVDFEQH--WRQSRSIQAQFRLTGNFEQHWHLQANLSTDNDN 342
           Y   +R I+  S L ++  Q   W Q+R ++ + R+         + A+LST N N
Sbjct: 277 YLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 332


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 289 YTASSRSIQAQSRLTVDFEQH--WRQSRSIQAQFRLTGNFEQHWHLQANLSTDNDN 342
           Y   +R I+  S L ++  Q   W Q+R ++ + R+         + A+LST N N
Sbjct: 66  YLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 289 YTASSRSIQAQSRLTVDFEQH--WRQSRSIQAQFRLTGNFEQHWHLQANLSTDNDN 342
           Y   +R I+  S L ++  Q   W Q+R ++ + R+         + A+LST N N
Sbjct: 66  YLTRARRIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLSTSNSN 121


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 38  VYKPGRYVADPGRYDPSR---DNSGRYIP 63
           +++  +Y  DP ++DP R   +N  + +P
Sbjct: 383 IHRDPQYFPDPEKFDPERFSDENKAKIVP 411


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,415
Number of Sequences: 317
Number of extensions: 2963
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 342
length of database: 114,650
effective HSP length: 57
effective length of query: 285
effective length of database: 96,581
effective search space: 27525585
effective search space used: 27525585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)