GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000329-TA|BGIBMGA000329-PA|IPR000618|Insect cuticle
protein
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.7  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   2.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   6.8  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   8.9  
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.9  

>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 167 DNDVAPEGYHYLYETENKI 185
           DND+ PE Y  LYE E+K+
Sbjct: 132 DNDLEPEVYDILYEEESKL 150


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 40  KPGRYVADPGRYDPSRDN 57
           KPG YV+D   Y P +DN
Sbjct: 235 KPGSYVSDRASYTPQQDN 252


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 239 NASRTSATTIHAFSQIKASHRQSSHSKPASQPQQDHRSRLTALPDPTARTYTASSRSIQA 298
           N+S T    IH     K+ H  S  S  +SQ  +   S +   P  +  + ++SS +  A
Sbjct: 309 NSSETFVEAIHKILDTKSKHSSSKSSHDSSQGLES-TSSIALNPTSSISSTSSSSSTSSA 367

Query: 299 QSRLTVD 305
            S ++ D
Sbjct: 368 ISTISQD 374


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 243 TSATTIHAFSQIKASHRQSSHSKPASQPQQDHRSRLTALPDPTART 288
           ++ T +H  SQ+   + QSS    +  PQ + R  +     P   T
Sbjct: 259 STGTNLHTHSQLNPENEQSSSEFYSLNPQSEIRKEVVVTDQPLFST 304


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 250 AFSQIKASHRQSSHSKPASQPQQDHRSRLTALPDPTARTYTASSRSIQAQSRL 302
           A S    + +QSS S P  QP      +    P P A +Y     S++  + L
Sbjct: 297 AASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDASVKQAADL 349


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 219 YRVDYTADENGFVADGAHIPNASRTSATTIHAFSQIKASHR 259
           Y  + T    GFV  G H P      AT +  FS   ASH+
Sbjct: 40  YPRNRTVAIRGFVGTGWHKPRPDDVLATDLLVFSTDIASHK 80


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,082
Number of Sequences: 5004
Number of extensions: 54012
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 6
length of query: 342
length of database: 2,362,478
effective HSP length: 73
effective length of query: 269
effective length of database: 1,997,186
effective search space: 537243034
effective search space used: 537243034
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)