GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000329-TA|BGIBMGA000329-PA|IPR000618|Insect cuticle
protein
         (342 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   4.8  

>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 218 TYRVDYTADENGFVADGAHI-PNASRTSATTIHAFSQIKASHRQSSHSKPASQPQQDHRS 276
           T +VDY         +G H  P    +SAT  +  S     +  SS + P   P Q H S
Sbjct: 489 TNQVDYVLGHKDKYNEGPHYQPPIINSSATAANNSSSSTHHYNSSSQAIPLGGPNQGHSS 548

Query: 277 RL----TALPDPTARTYTASSRSIQAQSRLTVDFEQHWRQSRSIQAQFRLTGNFEQHWHL 332
                 T +         +++ S Q  S    + +    Q++SI  Q   + N+ + +  
Sbjct: 549 SSYTTETRVTGGGTGAPVSNNYSNQNYSSSAYNSQSSQHQTKSIPVQNYQSSNYNKSYSS 608

Query: 333 Q 333
           Q
Sbjct: 609 Q 609


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,575,794
Number of Sequences: 27539
Number of extensions: 290445
Number of successful extensions: 645
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 1
length of query: 342
length of database: 12,573,161
effective HSP length: 82
effective length of query: 260
effective length of database: 10,314,963
effective search space: 2681890380
effective search space used: 2681890380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)