GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000329-TA|BGIBMGA000329-PA|IPR000618|Insect cuticle
protein
         (342 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    53   3e-09
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   8.9  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 53.2 bits (122), Expect = 3e-09
 Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 152 PSGAGYDYKYGIIRYDNDVAPEG-YHYLYETENKILAEEAGKVENVGTENEGIKVKGFYE 210
           PSG G D    I     +V  +G Y   +ET N I  +E+G+ + V  E   +  +G   
Sbjct: 19  PSG-GADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDS 76

Query: 211 YVGPDGVTYRVDYTADENGFVADGAHIPNA 240
           Y  PDG    + Y ADENGF   G+HIP A
Sbjct: 77  YTAPDGQQVSITYVADENGFQVQGSHIPTA 106


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 283 DPTARTYTASSRSIQAQSRLTVDFEQHWRQSRSIQAQFRLTGNFEQHWH 331
           DP A T   +S     + R+      H+  S + Q+  RLT   E H H
Sbjct: 52  DPGAITGLVASLDGALKLRIRCSDVHHFESSFNAQSWQRLTSLHELHVH 100


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 256 ASHRQSSHSKPASQPQQDH 274
           +S R  S S   SQP QDH
Sbjct: 39  SSSRSPSPSLLTSQPHQDH 57


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 293 SRSIQAQSRLTVDFEQHWRQSR 314
           +R+ +  S L  D EQH+RQ R
Sbjct: 711 TRNSEMFSSLLSDTEQHFRQHR 732


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,875
Number of Sequences: 429
Number of extensions: 3601
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 342
length of database: 140,377
effective HSP length: 58
effective length of query: 284
effective length of database: 115,495
effective search space: 32800580
effective search space used: 32800580
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)