GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000328-TA|BGIBMGA000328-PA|IPR000618|Insect cuticle
protein
         (159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.0  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   4.0  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   4.0  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   4.0  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   9.3  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    24   9.3  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 71   GYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYS-APDGTPVKFTYTADENGYQPQSELL 129
            G+  +   +A S+  +    +++V A+        A +G+ V  T   D N     S + 
Sbjct: 1089 GHSRNGSHAAHSNNVIGTQPHVNVSAVPNTGNLKDALEGSAVSKTDDVD-NVVSGHSNVN 1147

Query: 130  PVAPPMPEAIRRAIDYILAHPPK 152
             V+   P  + R+ DY+++H P+
Sbjct: 1148 GVSKSRPNIVERSEDYVISHLPE 1170



 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 102 EYSAPDGTPVKFTYTADENGYQPQ-SELLPVAPPMP 136
           +Y   +   V+ T T DE+G+Q Q +    VA P+P
Sbjct: 955 DYEGTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIP 990


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 79  SAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENG 121
           SA  + SL+ V N+       +Y YS  +  P++F    +E G
Sbjct: 22  SANDNASLQ-VHNVSKSPEYSKYSYSRKNNEPIEFIQLREEEG 63


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 55  VILRSDTEVNPDGFSFGYETDNGISAQSSGS 85
           ++ +SDT     GFS G    +G S + +G+
Sbjct: 99  IVFKSDTNSTSSGFSVGEAISSGYSLKYNGT 129


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 49  GSEADAVILRSDTEVNPDGFSFGYETDNGIS 79
           G +A  V   + T    DGF +GY T+ GIS
Sbjct: 365 GIDASGVYWNASTRF-ADGFRYGYGTEVGIS 394


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 76  NGISAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPM 135
           NG     SGSLK V+N DV+      E SA D +        D    +P +E +P++P +
Sbjct: 222 NGNVLAPSGSLKAVENSDVI------ESSAEDSS------NTDNPSTKPSNE-MPISPLL 268

Query: 136 PEAI 139
             ++
Sbjct: 269 SSSV 272


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 101 YEYSAPDG-TPVKFTYTADENGYQPQSELL 129
           ++    DG  P+K  Y A EN YQ  +  L
Sbjct: 383 FDVDVADGQAPLKLPYNATENPYQAANRFL 412


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,696
Number of Sequences: 5004
Number of extensions: 25517
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 7
length of query: 159
length of database: 2,362,478
effective HSP length: 68
effective length of query: 91
effective length of database: 2,022,206
effective search space: 184020746
effective search space used: 184020746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)