GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000328-TA|BGIBMGA000328-PA|IPR000618|Insect cuticle
protein
         (159 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    30   0.89 
Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic letha...    27   4.7  
AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.     27   4.7  
U55364-5|AAQ23124.1|  368|Caenorhabditis elegans Prion-like-(q/n...    27   6.3  
U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily ass...    27   6.3  
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass...    27   6.3  
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass...    27   6.3  
Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 74  TDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELL---P 130
           T  G+ A +   LKKVD+I+   +Q   E S+P+  P   T+    +  +P   +    P
Sbjct: 116 TTEGLQADN---LKKVDDIEAAILQAVIESSSPE-PPRSSTHRQRIHRIRPGHRIRPSPP 171

Query: 131 VAPPMPEAIRRAI 143
             PP  +AI  A+
Sbjct: 172 APPPRVDAIEEAV 184


>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 130 PVAPPMPEAIRRAIDYILAHPPKTETVKK 158
           P+ PP+PE I   +  +LA  P   +V K
Sbjct: 57  PIPPPLPEPIPELVQILLAAEPNKPSVPK 85


>U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform a protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 58  RSDTEVNPDGFSFGYETDNGISAQSSGSLKKVDNIDVL 95
           R D  ++ DGF    ETD   S + + S  K+ N+DVL
Sbjct: 163 RQDGAIDQDGFRADDETD---SEEGTSSHPKLSNVDVL 197


>AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 58  RSDTEVNPDGFSFGYETDNGISAQSSGSLKKVDNIDVL 95
           R D  ++ DGF    ETD   S + + S  K+ N+DVL
Sbjct: 163 RQDGAIDQDGFRADDETD---SEEGTSSHPKLSNVDVL 197


>U55364-5|AAQ23124.1|  368|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
           isoform b protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 1   MKFL-VLALCVCAVSAQEFRGYKPLGVLAQPAXXXXXXXXXXXXXXXXXGSEADAVILRS 59
           M+FL +L++CV AV+AQ+   Y       QP+                 G+ A  +    
Sbjct: 1   MQFLTILSVCVLAVAAQQQSAYS-TNQQYQPSQGAQYDQYGSSTLQYNNGATAQPIQYNQ 59

Query: 60  DTEVNPDGFSFGYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADE 119
           + +    G +  Y  +   + Q+S       N++      QY+    +    +  Y A +
Sbjct: 60  NQQY---GSTAQYNQNQMQNQQNSNQYSTTSNMNNQQNSNQYQQGQQNNYGTQAQYDAGQ 116

Query: 120 N 120
           N
Sbjct: 117 N 117


>U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform b protein.
          Length = 868

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 88  KVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRR 141
           KV+NID+     + + +    T    T    E+ ++PQ+++L  AP  P +  R
Sbjct: 273 KVENIDLTIELNREQKATVTATKYPRTDFIMEDYHRPQTQILAPAPKKPNSTTR 326


>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform a protein.
          Length = 1004

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 88  KVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRR 141
           KV+NID+     + + +    T    T    E+ ++PQ+++L  AP  P +  R
Sbjct: 228 KVENIDLTIELNREQKATVTATKYPRTDFIMEDYHRPQTQILAPAPKKPNSTTR 281


>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform c protein.
          Length = 1099

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 88  KVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRR 141
           KV+NID+     + + +    T    T    E+ ++PQ+++L  AP  P +  R
Sbjct: 323 KVENIDLTIELNREQKATVTATKYPRTDFIMEDYHRPQTQILAPAPKKPNSTTR 376


>Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical
           protein T08G5.2 protein.
          Length = 728

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 113 FTYTADENGYQPQSELLPVAPPMPEAIRRAI 143
           F  +AD+ G + ++E++PV    PEA+ + I
Sbjct: 162 FGLSADKGGTKHRAEMVPVRYMAPEAVEKMI 192


>AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical
           protein W03F9.10 protein.
          Length = 602

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 53  DAVILRSDTEVNPDGFSFGYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVK 112
           DA  + +D+E   DGFS+G+    G      G + + + I    IQ + E  A + T  K
Sbjct: 94  DAFKISTDSE---DGFSYGHHVSKGEKKDDLGKVGQAERI----IQEEMEERAKENTEEK 146

Query: 113 FT 114
            +
Sbjct: 147 LS 148


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,799,037
Number of Sequences: 27539
Number of extensions: 148096
Number of successful extensions: 302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 10
length of query: 159
length of database: 12,573,161
effective HSP length: 76
effective length of query: 83
effective length of database: 10,480,197
effective search space: 869856351
effective search space used: 869856351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)