GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000328-TA|BGIBMGA000328-PA|IPR000618|Insect cuticle
protein
         (159 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...   103   6e-25

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score =  103 bits (248), Expect = 6e-25
 Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 49  GSEADAVILRSDTEVNPDG-FSFGYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPD 107
           G++ DAVI     EVN DG +   +ET NGIS Q SG  K+VDN   +  QG   Y+APD
Sbjct: 22  GADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPD 81

Query: 108 GTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTE 154
           G  V  TY ADENG+Q Q   +P APP+P  I+RA+++  AHP + +
Sbjct: 82  GQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHPEEDD 128


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,827
Number of Sequences: 429
Number of extensions: 1825
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 159
length of database: 140,377
effective HSP length: 53
effective length of query: 106
effective length of database: 117,640
effective search space: 12469840
effective search space used: 12469840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)