GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000328-TA|BGIBMGA000328-PA|IPR000618|Insect cuticle
protein
         (159 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    28   3.4  
At4g01870.1 68417.m00245 tolB protein-related contains weak simi...    27   4.5  
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea...    27   5.9  
At3g09090.1 68416.m01069 defective in exine formation protein (D...    27   5.9  

>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 118 DENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTET 155
           D+ GY P + + PV+PP P     +    ++ PP T T
Sbjct: 68  DDGGYTPPAPVPPVSPPPPTPSVPSPTPPVSPPPPTPT 105


>At4g01870.1 68417.m00245 tolB protein-related contains weak
           similarity to TolB protein precursor (Swiss-Prot:P44677)
           [Haemophilus influenzae]
          Length = 652

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 63  VNPDGFSFGYETDNGISAQSSGSLKKVDNI-------DVLAIQGQYEYSAPDGTPVKFTY 115
           V+PD    GY    G S Q    +  +++I        +L I G +  S+P+G  +    
Sbjct: 299 VSPDSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNS 358

Query: 116 TADENG 121
             D NG
Sbjct: 359 DFDING 364


>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400); BING4
           (gi:3811380) {Mus musculus]; similar to hypothetical
           protein GB:P40055 [Saccharomyces cerevisiae]
          Length = 536

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 90  DNIDVLAIQGQYEYSAPDGTPVKFTYTA 117
           + +D+L+ + QY+   PD  P K  +TA
Sbjct: 100 NEVDILSSRNQYDIVLPDFGPYKLDFTA 127


>At3g09090.1 68416.m01069 defective in exine formation protein
           (DEX1) identical to defective in exine formation
           [Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
           Pfam domain PF01839: FG-GAP repeat
          Length = 896

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 53  DAVILRSDTEVNPDGFSFG-YETDNGISAQSSGSLKKVDNIDVLAIQGQYEY 103
           ++V   SD++ N +G      E D G+ A +  S + +   D LA +  Y+Y
Sbjct: 339 ESVDSHSDSKDNSEGVRMATVENDGGLEADADSSFELLRENDELADEYSYDY 390


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,668
Number of Sequences: 28952
Number of extensions: 136330
Number of successful extensions: 237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 4
length of query: 159
length of database: 12,070,560
effective HSP length: 76
effective length of query: 83
effective length of database: 9,870,208
effective search space: 819227264
effective search space used: 819227264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)