GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000327-TA|BGIBMGA000327-PA|IPR000618|Insect cuticle
protein
         (131 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.23 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   2.1  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   3.7  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    20   6.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    20   6.5  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    20   8.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   8.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    20   8.6  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    20   8.6  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    20   8.6  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.23
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 103 PTPPPIPEVIQRALAYLATAPP 124
           P P P+ EV Q+  +  A APP
Sbjct: 392 PVPQPVEEVTQKPSSTKAPAPP 413


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 86  LSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPENNRP 131
           ++ +    G  P    +P P         A  Y  +  P+PE+ RP
Sbjct: 184 IALVLPTQGASPLPLLVPIPQRTASTASSASNYSPSQSPEPESVRP 229


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 76  YPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 108
           YP   G +  L+     N +    S LP P P+
Sbjct: 210 YPFYPGTSAMLAAYQRYNPYLQAASMLPKPTPL 242


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 35  EPDGSYQYSYETGNGISAAERGALK 59
           +PDG Y+  YE  +    +E  + K
Sbjct: 119 DPDGIYRKQYEIDDDYDYSELDSAK 143



 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1 MKTFVILF 8
         MKTFVILF
Sbjct: 1 MKTFVILF 8


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 94  GFQPQGSHLPTPPPIPEVIQRALAY 118
           G  PQG   P  PP   +  RA  Y
Sbjct: 72  GQPPQGMPYPRFPPYDRMDIRAAGY 96


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 31  ESSIEPDGSYQYSY 44
           E+  +PDG+Y+  Y
Sbjct: 107 EAKYDPDGTYKKRY 120


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 18  PQSPTEPIPILKQESSIEPDGSYQY 42
           PQ+P   +  +  +S + P G   Y
Sbjct: 651 PQNPDNDVHSIVDDSDVGPSGDCFY 675


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 97  PQGSHLPTPPPIPEVIQRALAYLATAPPQP 126
           P    +P+P     ++   ++   T PP P
Sbjct: 72  PPKREIPSPKRSSPILAEKVSVSPTTPPTP 101


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 28  LKQESSIEPDGSYQYSYETGNGISAAERGALKNIGA 63
           L  +S   P  + ++ Y +GN     E  + +N GA
Sbjct: 407 LMAKSMKSPTYALKFEYRSGNSWFEHETESGRNFGA 442


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 28  LKQESSIEPDGSYQYSYETGNGISAAERGALKNIGA 63
           L  +S   P  + ++ Y +GN     E  + +N GA
Sbjct: 407 LMAKSMKSPTYALKFEYRSGNSWFEHETESGRNFGA 442


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,613
Number of Sequences: 317
Number of extensions: 1644
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 131
length of database: 114,650
effective HSP length: 51
effective length of query: 80
effective length of database: 98,483
effective search space:  7878640
effective search space used:  7878640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)