GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000327-TA|BGIBMGA000327-PA|IPR000618|Insect cuticle
protein
         (131 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38001| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.100
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.40 
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       31   0.40 
SB_25283| Best HMM Match : LIM (HMM E-Value=1.1)                       29   0.93 
SB_56163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39)                      29   1.2  
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)                        29   1.6  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_2431| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.2  
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             28   2.8  
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)                  27   3.8  
SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_30055| Best HMM Match : Histone (HMM E-Value=0.97)                  27   5.0  
SB_643| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.0  
SB_14513| Best HMM Match : rve (HMM E-Value=0.14)                      27   6.6  
SB_42592| Best HMM Match : DUF1640 (HMM E-Value=1.7)                   26   8.7  
SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_54557| Best HMM Match : PHK_AB (HMM E-Value=0)                      26   8.7  
SB_30346| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_38001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 32.7 bits (71), Expect = 0.100
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 30  QESSIEPDGSYQYSYETGNGI-SAAERGALKNIGAEEPALQVEGQFQYPSEDGGTIQLSY 88
           Q+S I P GS   S + G G+ S A RG    + AEE  ++     Q PS        SY
Sbjct: 41  QDSQIRPRGSGSPSLQYGGGLPSPARRGTPSKLRAEETEIRRRSLPQVPSSRNSLSPSSY 100

Query: 89  IANENGFQPQG 99
             +++   P+G
Sbjct: 101 --SDHQITPRG 109


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 29  KQESSIEPDGSYQ---YSYETGNGISAAERGALKNIGAEEPALQVEGQFQYPSEDGGTIQ 85
           K++ S E   SY+   Y+ ETG+   + E     N   +EPA + +G F  P  +    Q
Sbjct: 848 KRKRSDEEFDSYESGDYTDETGSSCDSEEYTDTDN---DEPAHKNDGSF--PRRNESPSQ 902

Query: 86  LSYIANENGFQPQGSHLPTPPPIP 109
               +      P G  +P PPP P
Sbjct: 903 TPGGSESPSASPPGGSVPPPPPPP 926


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 43   SYETGNGISAAERGALKNIGAEEPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHL 102
            S +TG G+    R   +     E ++ V+G+ +  SED G ++  +   + G +P   H+
Sbjct: 1833 SKDTGEGVVGTSREPTRPGSKYEESVSVDGKKKEDSEDSGLVEFGF-PRQTGQEPLNFHI 1891


>SB_25283| Best HMM Match : LIM (HMM E-Value=1.1)
          Length = 1097

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 71  EGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPP 106
           EG+     +DGG I  ++  +E G+ P GS + T P
Sbjct: 343 EGKLYRSRQDGGAIDRAF-TDETGYDPHGSLMTTQP 377


>SB_56163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 66  PALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPP 107
           P +     F YP +D       Y A    + PQG+ LP PPP
Sbjct: 110 PPVDQYSAFPYPPQDQQAPP--YPAQNQYWNPQGTSLPPPPP 149


>SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 103 PTPPPIPEVIQRALAYL-ATAPPQPENN 129
           PTPPP PEVI R+ A L A  P  P  N
Sbjct: 172 PTPPP-PEVIYRSCAELKAARPSTPSGN 198


>SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39)
          Length = 258

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 15  VAAPQSPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGA 57
           ++A  SPT+P  + K E SIEP+ SY  S       S   RGA
Sbjct: 195 LSAEASPTQPT-VRKAEHSIEPNPSYSKSRGKTAQASQHSRGA 236


>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
          Length = 184

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 102 LPTPPPI--PEVIQRALAYLATAPPQPENNRP 131
           LPTPPP   P+   +    L T PP+P   RP
Sbjct: 135 LPTPPPPTPPQSTPKPRRVLPTPPPKPPTPRP 166


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 76   YPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQR---ALAYLATAPPQP 126
            YPS+D    Q  Y A + G Q   S  P P P  +       A AY   AP  P
Sbjct: 1269 YPSQDAA-YQTGYPAYQQGGQAYPSAAPAPAPAAQAYPSAAPATAYPTQAPANP 1321


>SB_2431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 103 PTPPPIPEVIQRALAYLATAPP 124
           PTPPP PEVI R+ A L  A P
Sbjct: 15  PTPPP-PEVIYRSCAELKAARP 35


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 66  PALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQ 125
           P  Q+  Q Q P    G  Q+  +    G  PQ   +P  PP+            T PP 
Sbjct: 170 PHQQMMMQQQAPGMGRGGPQMMQLGPRPGVPPQQQQMPQQPPVSTAAGTGRG--GTVPPT 227

Query: 126 PENNRP 131
           P    P
Sbjct: 228 PATAPP 233


>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
          Length = 264

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 96  QPQGSHLPTPPPIPEVIQRAL-AYLATAPPQP-ENNRP 131
           +PQ SH P  PP P+   R L ++    P +P E++RP
Sbjct: 151 RPQESHRPLEPPRPQEQHRPLESHRPLEPTRPQESHRP 188



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 96  QPQGSHLPTPPPIPEVIQRAL-AYLATAPPQP-ENNRP 131
           +PQ SH P  PP P+   R    +    PP+P E +RP
Sbjct: 181 RPQESHRPLEPPRPQEPHRPQEPHRPLEPPRPQEQHRP 218


>SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 24/76 (31%), Positives = 32/76 (42%)

Query: 29  KQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPALQVEGQFQYPSEDGGTIQLSY 88
           K+  S E + S Q SYE  N ISA+    +      +PA+Q E    + S   G   L+ 
Sbjct: 172 KEFVSQEQNDSGQPSYEVKNPISASGSQGIPPGKVLQPAVQAEDHSSFLSGTSGNTILAG 231

Query: 89  IANENGFQPQGSHLPT 104
             N      Q S  PT
Sbjct: 232 APNFMFPAQQSSGEPT 247


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 105 PPPIPEVIQRALAYLATAPPQPENNR 130
           PPP+P   +RAL      PP P + R
Sbjct: 565 PPPLPPAPKRALDLKPNLPPVPTHKR 590


>SB_30055| Best HMM Match : Histone (HMM E-Value=0.97)
          Length = 129

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 47  GNGISAAERGALKNIGAEEPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPT 104
           G+G+ +   G L  +  +E   Q  G+  +P+ DGG + +  ++     + +G+   T
Sbjct: 35  GDGLGSLAHGVLGQLTGKE---QTNGRLDFPARDGGLLVVMTMSGRGKGKAKGTKSKT 89


>SB_643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 46  TGNGISAAERGALKNIGAEEPALQVEGQFQYPSEDGGTIQLSYIANEN 93
           T  G+S   +G + ++G   P    E + + P E+   I +   AN N
Sbjct: 323 TSPGMSTPVQGNMTSLGMSTPVQGAESKVKSPPENTERIPVKVFANRN 370


>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 1101

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 50  ISAAERGALKNIGAE-EPALQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPP 107
           + AA+R + + + A   P     G FQ     GG+  +  +    G QP G +  TPPP
Sbjct: 866 VMAAKRMSDEELDAFLRPIYYARGGFQ-----GGSASIDRVRKWVGSQPVGGYTQTPPP 919


>SB_42592| Best HMM Match : DUF1640 (HMM E-Value=1.7)
          Length = 420

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 20  SPTEPIPILKQESSIEPDGSYQYSYETGNGI 50
           SP +P+PILK  S I      ++  ET N I
Sbjct: 346 SPLKPLPILKTSSRIRASFCLEFYGETTNVI 376


>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 86  LSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 127
           + Y + + GF P G++ P P P P        Y  +  P P+
Sbjct: 160 MGYPSAQPGFAPPGNYPPPPAPPPAYPPVTQGYNMSQYPPPD 201


>SB_54557| Best HMM Match : PHK_AB (HMM E-Value=0)
          Length = 863

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 47  GNGISAAERGALKNIGAEEPALQVEGQFQYPSEDGGTI 84
           G+G+ +   G L  +  E+   Q  G+  +P+ DGG +
Sbjct: 642 GDGLGSLAHGVLGQLTGEK---QTNGRLDFPARDGGLL 676


>SB_30346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 8  FGLVTVAVAAPQSPTEPIPILKQE-SSIEPDGSYQYSYETGNGISAA 53
          +GL +  ++AP  P  P P+  Q   + +    Y Y+  T  G S++
Sbjct: 8  YGLPSYTISAPPEPQTPPPLSHQPYMTYQTPSRYPYTAYTPGGASSS 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,965,235
Number of Sequences: 59808
Number of extensions: 220383
Number of successful extensions: 610
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 27
length of query: 131
length of database: 16,821,457
effective HSP length: 75
effective length of query: 56
effective length of database: 12,335,857
effective search space: 690807992
effective search space used: 690807992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 55 (26.2 bits)