GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000327-TA|BGIBMGA000327-PA|IPR000618|Insect cuticle
protein
         (131 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...   101   3e-24
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.36 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   0.64 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   4.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   5.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   5.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    20   7.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score =  101 bits (242), Expect = 3e-24
 Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 5/124 (4%)

Query: 12  TVAVAAPQSPT----EPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPA 67
           T  +AAPQ P+    +   I  Q+  +  DG+Y  ++ET NGIS  E G  K +  E P 
Sbjct: 10  TATLAAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPV 69

Query: 68  LQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 127
           +  +G   Y + DG  + ++Y+A+ENGFQ QGSH+PT PPIP  IQRAL + A  P + +
Sbjct: 70  VS-QGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHPEEDD 128

Query: 128 NNRP 131
             +P
Sbjct: 129 GGQP 132


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.36
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 83   TIQLSYIANENGFQPQGSHLPTPPPIPEVIQRA 115
            T+ LS   ++ G    GS   T PP P  I RA
Sbjct: 1374 TVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRA 1406



 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 106  PPIPEVIQRALAYLATAPPQPENNRP 131
            PP P   Q+  A     P   E N+P
Sbjct: 999  PPQPANAQQGQAQAQAKPQSQEANKP 1024


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 0.64
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 10  LVTVAVAAPQ--SPTEPIPILKQESSIEPDGSYQYS 43
           +VTVA++  +     E +P     +S+EPD    YS
Sbjct: 66  VVTVAISTGEWLLTEEKLPKTSSNASVEPDSKVTYS 101


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 90  ANENGFQPQGSHLPTPPPIPEVIQ 113
           AN N +QP    +P PP    V Q
Sbjct: 752 ANVNLWQPLSVSIPPPPSAQNVPQ 775


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 52 AAERGALKNIGAEEPALQV 70
          AA +G +   G E+P L++
Sbjct: 61 AANKGMINQYGGEQPTLRL 79


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase
          protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 13/42 (30%), Positives = 16/42 (38%)

Query: 20 SPTEPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNI 61
          SP    P  +  SS  PD SY +    G    A   G L  +
Sbjct: 49 SPVIGEPCQRVHSSRIPDLSYDFIVVGGGAARAVVAGRLSEV 90


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
          protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 1  MKTFVILFGLVTVAVAAPQSPT 22
          MK +++LF LVT+     +  T
Sbjct: 1  MKIYILLFVLVTITCVIAEDYT 22


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
          protein.
          Length = 125

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 1  MKTFVILFGLVTVAVAAPQSPT 22
          MK +++LF LVT+     +  T
Sbjct: 1  MKIYILLFVLVTITCVIAEDYT 22


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 99  GSHLPTPPPIPEVIQRALAYLATAPPQPENNRP 131
           G++ P   P P      L   A +  +P NNRP
Sbjct: 71  GNNRPIYIPQPRPPHPRLRREAESEAEPGNNRP 103


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,968
Number of Sequences: 429
Number of extensions: 2165
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 131
length of database: 140,377
effective HSP length: 51
effective length of query: 80
effective length of database: 118,498
effective search space:  9479840
effective search space used:  9479840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.8 bits)
S2: 40 (20.2 bits)