Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000326-TA|BGIBMGA000326-PA|IPR000618|Insect cuticle
protein
         (131 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    95   3e-22
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.16 

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 94.7 bits (225), Expect = 3e-22
 Identities = 44/98 (44%), Positives = 60/98 (61%)

Query: 20  GPTEPIPIVRDDSQINGDGSYQYAFETGNGISADQKGELKKVGDVEALEVQGEFKYPGEN 79
           G  +   I     ++N DG+Y   FET NGIS  + G+ K+V +   +  QG   Y   +
Sbjct: 22  GADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPD 81

Query: 80  GQDISLTYTADENGFHPSGSHLPTSPPIPEAIQRALDF 117
           GQ +S+TY ADENGF   GSH+PT+PPIP  IQRAL++
Sbjct: 82  GQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEW 119


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 83   ISLTYTADENGFHPSGSHLPTSPPIPEAIQRA 114
            + L+ +  + G +  GS   TSPP P +I RA
Sbjct: 1375 VDLSPSPSDRGRNDDGSDRLTSPPTPLSISRA 1406


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,240
Number of Sequences: 429
Number of extensions: 1504
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 131
length of database: 140,377
effective HSP length: 51
effective length of query: 80
effective length of database: 118,498
effective search space:  9479840
effective search space used:  9479840
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.8 bits)
S2: 40 (20.2 bits)