GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000326-TA|BGIBMGA000326-PA|IPR000618|Insect cuticle
protein
         (131 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   3.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   4.9  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 58  LKKVGDVEALEVQGEFKYPGENGQ 81
           L+KVGD    +    F+ P ENG+
Sbjct: 351 LRKVGDPSKRKGTYAFRTPDENGE 374


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 85   LTYTADENGFHPSGSHLPTSPPIPEA 110
            L YT+  +G   +  H  T   +PEA
Sbjct: 1178 LAYTSGGDGVRTTPIHCQTEQDVPEA 1203


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 18  PQGPTEPIPIVRDDSQI--NGDGSYQYAF 44
           PQ P   +  + DDS +  +GD  Y+  F
Sbjct: 651 PQNPDNDVHSIVDDSDVGPSGDCFYENKF 679


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 70  QGEFKYPGENGQDISLTYTADENGFHPSGSH 100
           QG  + P      ++++     +G+HPS S+
Sbjct: 136 QGFAQQPMFPSMSVNVSMNMTMHGYHPSSSY 166


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,530
Number of Sequences: 317
Number of extensions: 1080
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 131
length of database: 114,650
effective HSP length: 51
effective length of query: 80
effective length of database: 98,483
effective search space:  7878640
effective search space used:  7878640
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.3 bits)
S2: 39 (19.8 bits)